| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0079 |
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| Symbol | |
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| ID | 4689818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 82622 |
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| End bp | 83347 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639833073 |
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| Product | IS605 family transposase OrfB |
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| Protein accession | YP_980326 |
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| Protein GI | 121602997 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0675] Transposase and inactivated derivatives |
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| TIGRFAM ID | [TIGR01766] transposase, IS605 OrfB family, central region |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.523128 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGCCAGCGG CTGGGTTGGA ACCCAGCCTG GCCATTGACG TCGGTTTGAC GGTGTTCGCC
GCCACGAGCG CCGGCGTCAA AATCAAGCCA TTGCTGGCGC TCAAGCGCCA GGCCCGGTAT
GTGCGTCGGG CGCAGAAATC AGTCAGCCGC AAAGTCAAGG GATCGGCCAA TCGCAAGAAG
GCCATTTGCA AGCTCGGCGA CCTGCACAGG CGCATTGCGC GCCAGCGCGA AGACTGGCTG
CACAAGCTGA CGACGGAGTT GGCCGACCGA CATCCGGTCA TTGCGATCGA AGACCTGCGG
ATCAAGAACA TGTCGGCCAG CGCCAAGGGA ACGAAGGACG CTCCCGGCAA AAACATCCGC
CAGAAGGCAG GCCTGAACCG TTTGATTCTG GACGCCGCCT GGGGCGAGTT CGGCCGGCAA
CTCCAGTACA AGCTGCAGTG GCGCGGCGGC CAGCTGGTGC TGGTCGAACC GGCTTACTCA
AGCCAAACGT GTGCCGCATG CGACCATGTG GCGGCGGAGA ATCGCAAATC TCAGGCGTTT
TCAGCGTGGC CTGTGGCCAC GCTGAAAACG CCGACATCAA CGCCGCACAG GTGCTCCTGC
AGCGAGCGAA GGAACAATGG GCCGCGGGGC ACGCGGCACA GGCTGGAGAA TCTTCTCCAG
CCACGGCCTG TGGAGAGGTG GTCAGACGTC GGCCAGCGCG CAAGCGCTCC GATGCAGCCT
CTGTGA
|
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| Protein sequence | MPAAGLEPSL AIDVGLTVFA ATSAGVKIKP LLALKRQARY VRRAQKSVSR KVKGSANRKK
AICKLGDLHR RIARQREDWL HKLTTELADR HPVIAIEDLR IKNMSASAKG TKDAPGKNIR
QKAGLNRLIL DAAWGEFGRQ LQYKLQWRGG QLVLVEPAYS SQTCAACDHV AAENRKSQAF
SAWPVATLKT PTSTPHRCSC SERRNNGPRG TRHRLENLLQ PRPVERWSDV GQRASAPMQP
L
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