Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_0044 |
Symbol | |
ID | 4689329 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 44646 |
End bp | 45938 |
Gene Length | 1293 bp |
Protein Length | 430 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639833038 |
Product | TRAP dicarboxylate transporter, DctM subunit |
Protein accession | YP_980291 |
Protein GI | 121602962 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.520063 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.383909 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAACG AAGGCCTCGC TTTCATCGTT TTTTCAGCCG GCATGCTGCT GCTCATGGGC ATCGGCATGA ACATGGGCCT GGCGCTGGTG CTGACCGGCG CCGGCATGGC CGCCGTGCTC GGCTTCTGGG ACACCCAGCT GCTGGCGCAA AACCTGGTCG CCGGCGTGGA CAGCTTTCCG CTGCTGGCCG TGCCATTTTT TATCCTGGCC GGCGAGCTGA TGAACTCGGG CGGCATCAGC AGCCGCATCA TCGCCATGGC GCAGGCCTGG GTCGGCCACA TTCGCGGCGG GCTGGGCTTC GTGGCGATTG CCGCGGCCGT GATGATGGCC AGCATGAGCG GCTCGGCGCT GGCCGACACC GCCGCGCTGG CGACCATCCT GCTGCCGATG ATGCGCCAGC AGGGCTACCC GATGCACACC TCGGCCGGCC TGATTGCCTC GGGCGGCATC ATCGCGCCCA TCATTCCGCC GTCCATGCCC TTCGTGATCT ACGGCGTGAC CACCAATACG TCGATCTCGG CGCTGTTCAT CTCGGGCATC GTGCCGGGCA TCATCATGGG CATCGGCCTG ATCATTGCGT GGAAACTGGT GCTGCGCAAG ATGGACCTGC CGCAAGGCCA GCCGCTGCCC ATGAAGGAAC GGCTGCGCGC CACCGCCAAG GCTTTCTGGG CCATGCTGAT GCCGATCATC ATCATCGGCG GCATGAAAAC CGGCATCTTC ACGCCGACCG AAGCGGCCGT GGTGGCCGCG TTCTACGCGC TGTTCGTCGC CCTGTTCGTG CACCGCGAGA TGAAGCTGGC CGAGATCCAC GGCGTGCTGG TGCGCGCGGG CAAGACCACC GCCATCGTCA TGTTTTTGTG CGCCGGCGCC CAAGTAGCGA GCTACATGAT CACGCTGGCC GACCTGCCGG GCACGCTCAC CGGCTGGCTC GGCCCGCTGG TCGAAAGCCC CAAGCTCTTG ATGGCCGTGA TGATGATCGT GCTGGTCATC GTCGGCACGG CGCTGGACCT GACGCCGACG ATTTTGATCT TCGCGCCGGT GATGCTGCCG ATTGCGGTCA AGGCCGGCAT CGACCCGGTG TACTTCGGCC TGATGTTCGT GCTCAACGGC GCGATCGGCC TGATCACGCC GCCCGTGGGC ACCGTGCTCA ACGTGGTGGC CGGCGTCGGC CGGATGCCGC TGCACCGGGT GATCCAGGGG GTCAACCCTT TTCTCATCAC CTATGTGCTG ATCCTTGTCA TGTTCGTCAT CTTTCCCCAG ATCGTCACCG CGCCCGTCGC GTGGATGCGC TAA
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Protein sequence | MSNEGLAFIV FSAGMLLLMG IGMNMGLALV LTGAGMAAVL GFWDTQLLAQ NLVAGVDSFP LLAVPFFILA GELMNSGGIS SRIIAMAQAW VGHIRGGLGF VAIAAAVMMA SMSGSALADT AALATILLPM MRQQGYPMHT SAGLIASGGI IAPIIPPSMP FVIYGVTTNT SISALFISGI VPGIIMGIGL IIAWKLVLRK MDLPQGQPLP MKERLRATAK AFWAMLMPII IIGGMKTGIF TPTEAAVVAA FYALFVALFV HREMKLAEIH GVLVRAGKTT AIVMFLCAGA QVASYMITLA DLPGTLTGWL GPLVESPKLL MAVMMIVLVI VGTALDLTPT ILIFAPVMLP IAVKAGIDPV YFGLMFVLNG AIGLITPPVG TVLNVVAGVG RMPLHRVIQG VNPFLITYVL ILVMFVIFPQ IVTAPVAWMR
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