Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_0043 |
Symbol | |
ID | 4689983 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 43586 |
End bp | 44605 |
Gene Length | 1020 bp |
Protein Length | 339 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 639833037 |
Product | TRAP dicarboxylate transporter, DctP subunit |
Protein accession | YP_980290 |
Protein GI | 121602961 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.482624 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.263408 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTTTTC TTCGTAGAAC CGTGATTGCC GCCGCCGCTG CCGTGGCCTT GAGCGCCTCG TTTTCCGCGC TGGCGCAGGA CATCAAGCCG CGCCTGATCC GCTTCGGCTA CGGCCTGAAC GAGCAAAGCA ACCAGGGCCG CGCCGCCAAG GTATTCGCCG ACGAGGTCGC CAAGGCCTCG GGCGGCAAGA TGAAGGTGCG CGCCATCGGC GCCGCCGCGC TCGGCCCCGA CACGCAGATG CAGCAGGCCC TGATTGGCGG CGCGCAGGAA ATGATGGTCG GCTCGACCGC CACGCTGGTC GGCATCACCA AGGAAATGGC GCTGTGGGAC ACGCCCTTCC TGATCAACAA CACCAAGGAA GCCGACGCCC TGCTTGACGG CCCGATTGGC GAGAAGATCA AGGACAAGCT GCAGGACAAA GGGCTGGTCG GCCTGGTCTA TTGGGAAAAC GGCTTTCGCA ACCTGACCAA CAGCAAGCGC CCGGTCACCA AGGTCGAGGA TCTGGACGGC ATCAAGCTGC GCGTGATGCA GAACAACGTG TTTTTGAGCA GCTTCAAGAC GCTGGGCGCC AACGCCATTC CGATGGCGTT TTCCGAACTC TTCGGCGCGC TGGAAACCAA GACCGTCGAT GGCCAGGAAA ACCCGTACAA CACGATTTTG TCGAGCAAGT TCTACGAGGT GCAGAAGTAC CTGACGGTGA CCAACCACGT TTACAGCCCG TGGATCGTGC TGGTCAGCAA GAAGTGGTGG GACCAGCTGT CCAAGGCCGA GCAGAAGGTG CTGATGGACG CGGCCAAGAC CAGCCGCGAC TACGAGCGCA AGGACACGCG CGAGGAAGCC TCCAAAGCCA TGGCCGACCT CAAGGCCAAG GGCATGCTGG TCAATGAGCT GGCGCCCGCA GAAGCCGACC GCATGCGCAA CAAGCTGACC CGCGTGTATG CCGAAATCGG CACCGAAGTC GGCATGGACC TGTGGATTGC CACGCAGAAC GAACTGCTGA AGATTCGCGG CAAGAAATGA
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Protein sequence | MTFLRRTVIA AAAAVALSAS FSALAQDIKP RLIRFGYGLN EQSNQGRAAK VFADEVAKAS GGKMKVRAIG AAALGPDTQM QQALIGGAQE MMVGSTATLV GITKEMALWD TPFLINNTKE ADALLDGPIG EKIKDKLQDK GLVGLVYWEN GFRNLTNSKR PVTKVEDLDG IKLRVMQNNV FLSSFKTLGA NAIPMAFSEL FGALETKTVD GQENPYNTIL SSKFYEVQKY LTVTNHVYSP WIVLVSKKWW DQLSKAEQKV LMDAAKTSRD YERKDTREEA SKAMADLKAK GMLVNELAPA EADRMRNKLT RVYAEIGTEV GMDLWIATQN ELLKIRGKK
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