| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4560 |
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| Symbol | |
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| ID | 5107018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 5001129 |
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| End bp | 5002082 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640505831 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_001190039 |
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| Protein GI | 146309574 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACTGA CCAAGAAACT CAGCCTGTTC GCCGCAGCTG CGGCCATCAC TGCCAGCACC
GCGGTGCTCG CTGCCCCGAC CTTCATCAAC GTGCTCACCG GCGGCACCAG CGGTGTGTAC
TACCCGATCG GCGTGGCCCT GTCGCAGCTG TACAGCAACG GCATCGACGG CGCCAAGACC
TCGGTACAGG CGACCAAGGC ATCGGTGGAA AACCTCAACC TGCTGCAGGC CGGTCGCGGC
GAACTGGCCT TCGCCCTGGG CGACTCGGTG GCCGATGCCT GGAACGGTGT GGAAGACGCC
GGCTTCAAGG CGCCGCTGAA GAAGCTGCGC GCCATCGCCG GCACCTACCC GAACTACATC
CAGATCGTCG CCAACGCCGA ATCCGGCATC AAGACCCTGG AAGACCTCAA GGGCAAGCGC
ATCTCCGTCG GCGCGCCGAA GTCCGGCACC GAGCTCAACG CCCGCGCCAT CTTCGAAGCC
GCCGGCCTGA GCTACAAGGA CATGGGCAAG GTCGAGTTCC TGCCGTACGC CGAGTCGGTG
GAGCTGATCA AGAACCGCCA GCTGGACGCC ACCCTGCAGT CCTCCGGTCT GGGCATGGCC
GCCATTCGTG ACCTGGCCTC GACCATGAAG ATCAGCTTCG TCTCCATCCC GGCCGATGTG
ACCGCGAAGA TCGACAACGC CGCCTACGAG GCCGCCACCA TCCCGGCCGG CACCTACGAC
GGTCAGGACG CCGACGTGCC CACCGTGGCC ATCAACAACA TCCTGGTTAC CCATGAAGGC
GTCTCCGACG AGGTGGCCTA CCAGATGACC AAGCTGATGT TCGACAACCT TGAGCGTCTG
GGCACCGCCC ACTCCGCGGC CAAGGACATC AAGCTGGAAA GCGCCACCAA GAACCTGCCG
ATCCCGCTGC ACCCGGGTGC CGAGCGCTTC TACAAGGAAG CCGGCGCGCT CTGA
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| Protein sequence | MRLTKKLSLF AAAAAITAST AVLAAPTFIN VLTGGTSGVY YPIGVALSQL YSNGIDGAKT
SVQATKASVE NLNLLQAGRG ELAFALGDSV ADAWNGVEDA GFKAPLKKLR AIAGTYPNYI
QIVANAESGI KTLEDLKGKR ISVGAPKSGT ELNARAIFEA AGLSYKDMGK VEFLPYAESV
ELIKNRQLDA TLQSSGLGMA AIRDLASTMK ISFVSIPADV TAKIDNAAYE AATIPAGTYD
GQDADVPTVA INNILVTHEG VSDEVAYQMT KLMFDNLERL GTAHSAAKDI KLESATKNLP
IPLHPGAERF YKEAGAL
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