Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4490 |
Symbol | |
ID | 5107185 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 4923506 |
End bp | 4925740 |
Gene Length | 2235 bp |
Protein Length | 744 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640505761 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001189969 |
Protein GI | 146309504 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1388] FOG: LysM repeat |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.474839 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 62 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGAATA CCAAGATCCA CACCGTTCAG AACGGCGATA CCTTGGGTGC AATCGCTCAA CAACATGCGA CTACGACGAG TGAGTTGCAG CGGCTCAACC CTATCATTCG TGACCCGAAC GTCATTCATG CCGGTTGGAA ACTCAAAGTT CCAGATCAAG CGGCAGCCAA TGAGGCTAGA GCGCCAGCCC CCGGCCAACC GAAGCCTCAA TCCCTGCCGC CAGCCCAACA CAGCACGGAT GAAAGCAGCA GCCAGACGCA ATGCACGAGC CAATGCCAGG ATGAACTGGT GGATGTGGCG CACATCACGG GCGACTCTCA CTATTACGTG TTGAACGAGC GACAAGCGCA GGCACTGAAG CGTGAAATTC AACGCGTACA GATCTTGATG GATGAGCTGC AGCAAAAGCT CGCGCAAGCC GCAGAGCGCG TCGAATGCCT GAAAGAGCGC ACCCAGGGCA ACGAATGCAA TTGCAGCCGT TGCATCAAGC AGGCCTGGAA CGAAAAGGCC GAACAAGCAG GCCTGGTTCT TCTTTCACCG CCGCCGCAAG AACAAGAAGC CGCCGTTCCG ACCACGGAAG AAGATATACA GGGCCAACTG CGCACACTGC AGGATGCGCG CATCTGGTAT GAATCCTATA CGCCGGTTTT CAGCCCCTCT CATGCCACCG GTAACCTGCT CGAAAGCAAC TGGCGCCTCC TACGCCAGAA AAAGCTAGCC GAACTGGATG CAGAGATCGC AACCCTGAGG GGTAGATTGA GATCAGAGCC GGGAGACAGC GGCACACTGG CCAGCGGCAC CAGGCCGAAT CTGGCTCATG GCCGTGGCCG CAGCACGGAA CGAGAACGTG GCACTAGACG CCGCAGTGGC GTCACCGTGG TAGAGGTCGC GCTGTTCAGC CAGCCAGATC GGCGCTATTA CATCAGCACT CGCTTCCGTG AGCGGGAGGA CTGGAAACTC AAGGTGAGCA GCACCGTGCT GGCAGGCAAA CCTTTCGGCC GTCAACTGGC CAAGGATCTG CTCGACGACA TCCGCAAGGG GATCGGCGAA GGTCGCAAAT CCAGTCCGAT AGGCGCGCTG GAAGCCAAGC TGGTTGGCTG GACGAGCAAG GAAGACAACC TGCTCAACGC CCTGCACAAG GAGACCAACT GGGCCAGCAA TCCAGATGAT TCTGCACCTT ACGCCACCTC AGCCGAAGCT CACGCTCTGC GCTTCGCGGC CAGCGCCAGC GCGGGTGTGA ATAACTGGAA CCCGACCGAG GGCAACATTG AGGTGGGTGC CAAGGCCAGT GCCGCGCTCT CATTAGCTGA AGGTTCAGTT TCACTCACCA GCTTCTTTCC CTCTCAGGGT GGACACCCGC TACGTCTGCG TTATCGCAAC GCAGCAGGGC AGCAAGTCGA CTGCCCACTG GGTGTCATAC GCTTGCAAGG CAAGGTGGAG CTTTCCTGCT TCGTCGGCGC CCATGCCCAG GCATCGGCGG GCGTTACCGT ACGCTACAAA CCCGGTGACG AAGGCGCGGG GGGCGCCACG GCATTGCTCG GCTCACCGCA TATCGAGCCG AGCCGTGGCG GCAATATAGG GCTGAAAGGC GACGCGTTCG CTGGCGCTCA GGCCGGTGGC GCACTGAGCG GTGCACTGCA GTGGGTAGAG CCATCGAACC AGGGCCGTGG GGCCATCGTC AGAGGCCAGT CCAACGCCAG CAGCAGCTGG AGTAGCCTCG CGGAAATCAA GGCAGAGGCC AGTGCTGCAT TCGGCGCAGG TATCGGCGGC GACTTCGGTA TCACCATCGC CAGAGACCGG CTTGCCGTGA ACTGCAAAGG CCGGCTGGTA TTCGGCCCAG GCGCCAGCGG CGGTTTTTCG ACCGTGGTGG ATCTGGAGAA GACCTATGAA CTGCTTAAGC TAGTGTGTGA AGCCCTGGCC GATGTGGATT ATCGCTATTT ACTGGGTGTT TCTCAGGAGG CTTTTAACTA TATGGCTTGG GGTTTGTACC AAGTGGCAAG CGCACCTGGT ACCGCTGCAA TCCAAGCGTT TGAAAATGGT GCTCAGAAGA TGTCCCTTTG GTGGAGAAGG CGTAGCGCCT CCATGGTCGA GGCAGAAAAC CTAGCCCGCT ATCTTCTAAC TAATCGCGCC GTATTGATAA ATGGCAAGCG CTTACCTCTG GACAAACTGC CACCGCAAAC CGTCGGTCCG ATGTTGTATG TACTTAGTGA GAGTTATGTG GCTCTTCGCA TTTAA
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Protein sequence | MSNTKIHTVQ NGDTLGAIAQ QHATTTSELQ RLNPIIRDPN VIHAGWKLKV PDQAAANEAR APAPGQPKPQ SLPPAQHSTD ESSSQTQCTS QCQDELVDVA HITGDSHYYV LNERQAQALK REIQRVQILM DELQQKLAQA AERVECLKER TQGNECNCSR CIKQAWNEKA EQAGLVLLSP PPQEQEAAVP TTEEDIQGQL RTLQDARIWY ESYTPVFSPS HATGNLLESN WRLLRQKKLA ELDAEIATLR GRLRSEPGDS GTLASGTRPN LAHGRGRSTE RERGTRRRSG VTVVEVALFS QPDRRYYIST RFREREDWKL KVSSTVLAGK PFGRQLAKDL LDDIRKGIGE GRKSSPIGAL EAKLVGWTSK EDNLLNALHK ETNWASNPDD SAPYATSAEA HALRFAASAS AGVNNWNPTE GNIEVGAKAS AALSLAEGSV SLTSFFPSQG GHPLRLRYRN AAGQQVDCPL GVIRLQGKVE LSCFVGAHAQ ASAGVTVRYK PGDEGAGGAT ALLGSPHIEP SRGGNIGLKG DAFAGAQAGG ALSGALQWVE PSNQGRGAIV RGQSNASSSW SSLAEIKAEA SAAFGAGIGG DFGITIARDR LAVNCKGRLV FGPGASGGFS TVVDLEKTYE LLKLVCEALA DVDYRYLLGV SQEAFNYMAW GLYQVASAPG TAAIQAFENG AQKMSLWWRR RSASMVEAEN LARYLLTNRA VLINGKRLPL DKLPPQTVGP MLYVLSESYV ALRI
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