Gene Pmen_4490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4490 
Symbol 
ID5107185 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4923506 
End bp4925740 
Gene Length2235 bp 
Protein Length744 aa 
Translation table11 
GC content59% 
IMG OID640505761 
Productpeptidoglycan-binding LysM 
Protein accessionYP_001189969 
Protein GI146309504 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.474839 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones62 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGAATA CCAAGATCCA CACCGTTCAG AACGGCGATA CCTTGGGTGC AATCGCTCAA 
CAACATGCGA CTACGACGAG TGAGTTGCAG CGGCTCAACC CTATCATTCG TGACCCGAAC
GTCATTCATG CCGGTTGGAA ACTCAAAGTT CCAGATCAAG CGGCAGCCAA TGAGGCTAGA
GCGCCAGCCC CCGGCCAACC GAAGCCTCAA TCCCTGCCGC CAGCCCAACA CAGCACGGAT
GAAAGCAGCA GCCAGACGCA ATGCACGAGC CAATGCCAGG ATGAACTGGT GGATGTGGCG
CACATCACGG GCGACTCTCA CTATTACGTG TTGAACGAGC GACAAGCGCA GGCACTGAAG
CGTGAAATTC AACGCGTACA GATCTTGATG GATGAGCTGC AGCAAAAGCT CGCGCAAGCC
GCAGAGCGCG TCGAATGCCT GAAAGAGCGC ACCCAGGGCA ACGAATGCAA TTGCAGCCGT
TGCATCAAGC AGGCCTGGAA CGAAAAGGCC GAACAAGCAG GCCTGGTTCT TCTTTCACCG
CCGCCGCAAG AACAAGAAGC CGCCGTTCCG ACCACGGAAG AAGATATACA GGGCCAACTG
CGCACACTGC AGGATGCGCG CATCTGGTAT GAATCCTATA CGCCGGTTTT CAGCCCCTCT
CATGCCACCG GTAACCTGCT CGAAAGCAAC TGGCGCCTCC TACGCCAGAA AAAGCTAGCC
GAACTGGATG CAGAGATCGC AACCCTGAGG GGTAGATTGA GATCAGAGCC GGGAGACAGC
GGCACACTGG CCAGCGGCAC CAGGCCGAAT CTGGCTCATG GCCGTGGCCG CAGCACGGAA
CGAGAACGTG GCACTAGACG CCGCAGTGGC GTCACCGTGG TAGAGGTCGC GCTGTTCAGC
CAGCCAGATC GGCGCTATTA CATCAGCACT CGCTTCCGTG AGCGGGAGGA CTGGAAACTC
AAGGTGAGCA GCACCGTGCT GGCAGGCAAA CCTTTCGGCC GTCAACTGGC CAAGGATCTG
CTCGACGACA TCCGCAAGGG GATCGGCGAA GGTCGCAAAT CCAGTCCGAT AGGCGCGCTG
GAAGCCAAGC TGGTTGGCTG GACGAGCAAG GAAGACAACC TGCTCAACGC CCTGCACAAG
GAGACCAACT GGGCCAGCAA TCCAGATGAT TCTGCACCTT ACGCCACCTC AGCCGAAGCT
CACGCTCTGC GCTTCGCGGC CAGCGCCAGC GCGGGTGTGA ATAACTGGAA CCCGACCGAG
GGCAACATTG AGGTGGGTGC CAAGGCCAGT GCCGCGCTCT CATTAGCTGA AGGTTCAGTT
TCACTCACCA GCTTCTTTCC CTCTCAGGGT GGACACCCGC TACGTCTGCG TTATCGCAAC
GCAGCAGGGC AGCAAGTCGA CTGCCCACTG GGTGTCATAC GCTTGCAAGG CAAGGTGGAG
CTTTCCTGCT TCGTCGGCGC CCATGCCCAG GCATCGGCGG GCGTTACCGT ACGCTACAAA
CCCGGTGACG AAGGCGCGGG GGGCGCCACG GCATTGCTCG GCTCACCGCA TATCGAGCCG
AGCCGTGGCG GCAATATAGG GCTGAAAGGC GACGCGTTCG CTGGCGCTCA GGCCGGTGGC
GCACTGAGCG GTGCACTGCA GTGGGTAGAG CCATCGAACC AGGGCCGTGG GGCCATCGTC
AGAGGCCAGT CCAACGCCAG CAGCAGCTGG AGTAGCCTCG CGGAAATCAA GGCAGAGGCC
AGTGCTGCAT TCGGCGCAGG TATCGGCGGC GACTTCGGTA TCACCATCGC CAGAGACCGG
CTTGCCGTGA ACTGCAAAGG CCGGCTGGTA TTCGGCCCAG GCGCCAGCGG CGGTTTTTCG
ACCGTGGTGG ATCTGGAGAA GACCTATGAA CTGCTTAAGC TAGTGTGTGA AGCCCTGGCC
GATGTGGATT ATCGCTATTT ACTGGGTGTT TCTCAGGAGG CTTTTAACTA TATGGCTTGG
GGTTTGTACC AAGTGGCAAG CGCACCTGGT ACCGCTGCAA TCCAAGCGTT TGAAAATGGT
GCTCAGAAGA TGTCCCTTTG GTGGAGAAGG CGTAGCGCCT CCATGGTCGA GGCAGAAAAC
CTAGCCCGCT ATCTTCTAAC TAATCGCGCC GTATTGATAA ATGGCAAGCG CTTACCTCTG
GACAAACTGC CACCGCAAAC CGTCGGTCCG ATGTTGTATG TACTTAGTGA GAGTTATGTG
GCTCTTCGCA TTTAA
 
Protein sequence
MSNTKIHTVQ NGDTLGAIAQ QHATTTSELQ RLNPIIRDPN VIHAGWKLKV PDQAAANEAR 
APAPGQPKPQ SLPPAQHSTD ESSSQTQCTS QCQDELVDVA HITGDSHYYV LNERQAQALK
REIQRVQILM DELQQKLAQA AERVECLKER TQGNECNCSR CIKQAWNEKA EQAGLVLLSP
PPQEQEAAVP TTEEDIQGQL RTLQDARIWY ESYTPVFSPS HATGNLLESN WRLLRQKKLA
ELDAEIATLR GRLRSEPGDS GTLASGTRPN LAHGRGRSTE RERGTRRRSG VTVVEVALFS
QPDRRYYIST RFREREDWKL KVSSTVLAGK PFGRQLAKDL LDDIRKGIGE GRKSSPIGAL
EAKLVGWTSK EDNLLNALHK ETNWASNPDD SAPYATSAEA HALRFAASAS AGVNNWNPTE
GNIEVGAKAS AALSLAEGSV SLTSFFPSQG GHPLRLRYRN AAGQQVDCPL GVIRLQGKVE
LSCFVGAHAQ ASAGVTVRYK PGDEGAGGAT ALLGSPHIEP SRGGNIGLKG DAFAGAQAGG
ALSGALQWVE PSNQGRGAIV RGQSNASSSW SSLAEIKAEA SAAFGAGIGG DFGITIARDR
LAVNCKGRLV FGPGASGGFS TVVDLEKTYE LLKLVCEALA DVDYRYLLGV SQEAFNYMAW
GLYQVASAPG TAAIQAFENG AQKMSLWWRR RSASMVEAEN LARYLLTNRA VLINGKRLPL
DKLPPQTVGP MLYVLSESYV ALRI