Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4478 |
Symbol | |
ID | 5107173 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4907937 |
End bp | 4909745 |
Gene Length | 1809 bp |
Protein Length | 602 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640505749 |
Product | pyruvate carboxylase subunit B |
Protein accession | YP_001189957 |
Protein GI | 146309492 |
COG category | [C] Energy production and conversion |
COG ID | [COG5016] Pyruvate/oxaloacetate carboxyltransferase |
TIGRFAM ID | [TIGR01108] oxaloacetate decarboxylase alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 63 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAAGA AAGTTACCGT CACCGACACC ATCCTGCGCG ACGCCCACCA GTCGCTGCTG GCGACCCGCA TGCGCACCGA GGACATGCTG CCGATCTGCG ACAAGCTCGA CCGCGTCGGC TACTGGTCGC TGGAAGTCTG GGGCGGCGCC ACCTTCGACG CCTGCGTGCG CTTTCTCAAG GAAGACCCCT GGGAGCGTCT GCGTCAGCTC AAGGCGGCGC TGCCCAACAC CCGTCTGCAG ATGCTCCTGC GCGGGCAGAA CCTGCTCGGC TACCGCCACT ACAGCGATGA CGTGGTGCGC GCCTTCGTGG CCAAGGCGGC GGTCAACGGC ATCGACGTGT TCCGCATCTT CGATGCGATG AACGACGTGC GTAACCTGCG CGTGTCCATC GAGGCGGTGA AGGCCGCCGG CAAGCACGCC CAGGGCACCA TCGCCTACAC CACCAGCCCG GTGCACACCA TCGACGCCTT CGTCGAGCAG GCCAAGCAGA TGGCCGCCAT GGGGGTGGAT TCCATCGCCA TCAAGGACAT GGCCGGCCTG CTCACCCCCT ACGCCACCGG CGATCTGGTC AGGGCGCTGA AAGACGCCCT GCCGCTGGAG GTGGTGGTGC ACTCGCACGA CACCGCCGGC GTGGCCAGCA TGTGCCAGCT CAAGGCCGTG GAAAACGGCG CCGACCGCAT CGACACCGCC ATCTCCAGCA TGGCCTGGGG CACCAGCCAT CCGGGTACCG AATCCATGGT CGCGGCGCTG CGTGGCACGC CCTACGACAC CGGCCTGGAC CTGGAACTGA TCCAGGAGAT CGGCCTGTAC TTCCACGCCG TGCGCAAGAA GTACCACCAG TTCGAGAGCG AATTCACCGG CGTCGATACC CGCGTGCAGG TCAATCAGGT ACCGGGCGGG ATGATTTCCA ACCTGGCCAA CCAGTTGAAG GAGCAGGGCG CCCTCAATCG CATGGGCGAA GTGCTGGAAG AGATTCCGCG GGTGCGCGCC GACCTCGGCT ACCCGCCGCT GGTGACGCCC ACTTCGCAGA TCGTCGGCAC CCAGGCCTTC TTCAACGTGC TCGCCGGCGA GCGCTACAAG ACCATCACCA ACGAGGTGAA GCTGTACTTG CAAGGGCGTT ACGGCAAGGC GCCGGGCAAG GTCAATGACG AGCTGCGCAA GCGTGCCATC GGTAACGAAG AAGTGATCGA AGGGCGCCCA GCCGACCTGC TCAAGCCGGA GATGGCCAAG CTGCGCGAGG AGATCGGCAG CCTGGCCAAG TCCGAAGAGG ACGTGCTGAC CTTCGCCATG TTCCCCGACA TCGGCCGCAA GTTCCTCGAG GAGCGTGCCG CCGGCACCCT CAAGCCCGAG GCCCTGCTGC CCATGCCGCA GGCCGGCGGC GCCGCGCCGG TGGGTGGTGA AGGCGTGCCC ACCGAGTTCG TGGTGGACGT GCATGGCGAG AGCTACCGCG TCGACATCAC CGGTGTCGGC GTCAAGGGCG ATGGCAAGCG CCACTTCTAC CTGTCCATCG ATGGCATGCC GGAAGAGGTG GTGTTCGAGC CGCTCAACGA GTTCGTCGCG GGCTCCGGCG GCAAGCGCAA GCAGGCCAGC GCGCCGGGCG ACGTGTCCAC CACCATGCCG GGCAACATCG TCGATGTACT GGTCAAGGAA GGTGATGCGG TCAGGGCCGG TCAGGCCGTG CTGATCACCG AAGCGATGAA GATGGAAACC GAAGTGCAGG CGCCGATCGC CGGTACCGTC AAGGCCGTTC ACGTGGCCAA GGGCGACCGC GTCAATCCGG GCGAAGTGCT GGTGGAAATC GAAGGTTAA
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Protein sequence | MSKKVTVTDT ILRDAHQSLL ATRMRTEDML PICDKLDRVG YWSLEVWGGA TFDACVRFLK EDPWERLRQL KAALPNTRLQ MLLRGQNLLG YRHYSDDVVR AFVAKAAVNG IDVFRIFDAM NDVRNLRVSI EAVKAAGKHA QGTIAYTTSP VHTIDAFVEQ AKQMAAMGVD SIAIKDMAGL LTPYATGDLV RALKDALPLE VVVHSHDTAG VASMCQLKAV ENGADRIDTA ISSMAWGTSH PGTESMVAAL RGTPYDTGLD LELIQEIGLY FHAVRKKYHQ FESEFTGVDT RVQVNQVPGG MISNLANQLK EQGALNRMGE VLEEIPRVRA DLGYPPLVTP TSQIVGTQAF FNVLAGERYK TITNEVKLYL QGRYGKAPGK VNDELRKRAI GNEEVIEGRP ADLLKPEMAK LREEIGSLAK SEEDVLTFAM FPDIGRKFLE ERAAGTLKPE ALLPMPQAGG AAPVGGEGVP TEFVVDVHGE SYRVDITGVG VKGDGKRHFY LSIDGMPEEV VFEPLNEFVA GSGGKRKQAS APGDVSTTMP GNIVDVLVKE GDAVRAGQAV LITEAMKMET EVQAPIAGTV KAVHVAKGDR VNPGEVLVEI EG
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