| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4450 |
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| Symbol | |
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| ID | 5107145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4878627 |
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| End bp | 4880924 |
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| Gene Length | 2298 bp |
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| Protein Length | 765 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640505721 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001189929 |
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| Protein GI | 146309464 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGCC GCGGCGCTTT TTTTTGCGCC GAAGAAAAGC ATGAGGCTGA CATGGGCAAC
GAAGAAGAAT TCCAAGAGCT GCTCCAACAC ATCGCACCGG ACCCGCACGA GCTGAGCCAG
CGCCAGCGCT TTCTCAACTG GAGCCAGATC GACAACGAAC GCCTGGCCCG CCATGCCCCG
CGCCTGGAAC GCGCCAACCG GCAGTTCATC GACGCGCTCT ACGAGCGTCT CGCCCAGTAT
CCCGCCCCGG CTGCCATCCT CGACGACCCG GCGACCACCG CACGCCTCAA GCACAGCCAG
TGCGACTATT ACCGGCGCCT GTGGCACAGC CCGCTGGACC AGGCTTACGT GCTCGAGCGC
CTGCGCATCG GCTGGGTGCA CCAGCACGTC GGCGTCGACC TGAAGTGGTA CCTCGGCGCG
TACCGCATGT ACCTGGACGG GATGCTCGAG GCCCTGCTCG AACCATCGCC GGCGAGCGAC
TGCTTCGCCA GTCTGATCAA GAAGGTGTTC TTCGACATCG GCCTGGCCCT GGACAGCTAC
GGCGCAGCGC AGCGCAAGGC GCTGCAGGAC AGCGAGGCGC GCTATGCGCG AGCCATGCGC
GGGGCCAACG ACGGGCTCTG GGAATGGCAG CTGGAACAGG ACCAGCTGTA CCTCTCCGAA
CGCTGGACCA GCATGCTCGG TCTCGACCGC GACAGCCTGG CCCCGACCAG CCGCAGTTGG
TTCAGCCGCG TGCACGGCGA CGACCTGCCC GGCCTGCGCC AGGCCATCGA CAACCACCTG
CGCGGCCTCA GCCCGACGCT GCACCACGAG TACCGCATTC GCCGCCGCGA CGGCAGCTAC
CTGTGGGTGC TGGTGCGCGG CGTGGCGGAA ACCTGCAGCG GCGGGGTGCG GCGCATCGCC
GGCTCGCAGA GCGACATCAG CCAGCGCCGC GCCGCCCAGG AGCAGCTGCA TCACGCCGCC
CGCCACGATC CGCTCACCGG GCTGGCCAAC CGCGCGCGTC TGGGCGAGCT GCTGCAGCAG
GCGCTGCAAC GCCAGCAGCG CCCCGGAGCC CGCGAAGCCG CGCTGCTGTT CATCGACCTC
GACCGCTTCA AGCTGATCAA CGACAGCCTC GGCCACCAGA TCGGCGACCG CGTGCTGGTG
GAGGTCGCCG AACGTCTCAG CCACTGCCTG CGTCCCGGCG ACCATCTGGC CCGTTTCGGC
GGCGACGAGT TCGTCGCCCT GCTCGACGAC CTCGCCTGCA TGGGCGACGC CGAGCGCGTG
GCCCAGCGCA TGCTCGACAG CCTGCACCCG CCACTGCGCC TCCAGGAACA GACGCTCGCG
GTCACCGCCA GCATCGGCAT CGCCGCCCTG CAGGAGCGCG GCCATCCGCT CGACCCGCTG
CAGGCCGCCG ATCTGGCGCT GTATCGCGCC AAGAGCGCCG GCAAGGCGCA GTTCGCCCGC
TACAGCAGCG AGCTGCAGCA ACAGGCACAG CGCCAGCTGG AGCTGCAGAA CGCGCTGGCC
CAGGCCTGCA GCTGCGGCGA ACTGCGTCTG GTGTATCAAC CGATCTGCCG CCTCGACCAG
GGCCAGCCGG TGCTGATGGG GGTCGAGGCG CTGCTGCGCT GGCAACACGA CGGGCGCGAG
ATTTCGCCAC TGGAGTTCAT CCCCTGCCTG GAAGAATCCG GGGAAATCCT TGCCGTCGGC
GACTGGGTGC TGCGTCAGGC CTGCACCCAG GTGCGCGCCT GGCAGCTGGC CGGCCAGACG
CAGCTGCGCT GCTCGGTCAA TCTGTCCAGT CGCCAGCTGC AGCAGGGCGA TTTCGCCGCA
CGGGTCGCCG ACGTGCTGCG GGAAACCGGC CTGCCCGCGG CCAGCCTGGT GCTGGAGATC
ACCGAGAGCC AGCTGATGCA GGACAGCGCG CAGAACCTCG CCTGCCTGCG CGAGCTGGCC
AGCCTCGGCG TGCAGCTGGC GTTGGACGAC TTCGGCACGG GCTACTCCTC GCTCGGCTAT
CTCAAGCGCT TTCCGCTGCA CATCATCAAG GTGGACAAGA GCTTCATCGC CGGCACGCCG
CAGGACGCCG AGTCGCTGGC CATCAGCCGG GCGATTATCG GCCTCGGTCA CAGCCTGGGC
CTAACGGTGG TGGCCGAAGG CGTCGAGCAG CAGGCGCAGA TCGACTTCCT CGGCCGCGAA
GGCTGCCTCT ACGCCCAGGG CTACTGGTTC AGTCGGCCGC GCTCGCCCGA CGATCTGCAA
CGCCTGTTCA GCGGCGAGGA CTGCTTCGAC GGGCTCTGGT GCCTCTTGGA CGCGTCGCCG
CAGGCGGTGC GCCCATGA
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| Protein sequence | MARRGAFFCA EEKHEADMGN EEEFQELLQH IAPDPHELSQ RQRFLNWSQI DNERLARHAP
RLERANRQFI DALYERLAQY PAPAAILDDP ATTARLKHSQ CDYYRRLWHS PLDQAYVLER
LRIGWVHQHV GVDLKWYLGA YRMYLDGMLE ALLEPSPASD CFASLIKKVF FDIGLALDSY
GAAQRKALQD SEARYARAMR GANDGLWEWQ LEQDQLYLSE RWTSMLGLDR DSLAPTSRSW
FSRVHGDDLP GLRQAIDNHL RGLSPTLHHE YRIRRRDGSY LWVLVRGVAE TCSGGVRRIA
GSQSDISQRR AAQEQLHHAA RHDPLTGLAN RARLGELLQQ ALQRQQRPGA REAALLFIDL
DRFKLINDSL GHQIGDRVLV EVAERLSHCL RPGDHLARFG GDEFVALLDD LACMGDAERV
AQRMLDSLHP PLRLQEQTLA VTASIGIAAL QERGHPLDPL QAADLALYRA KSAGKAQFAR
YSSELQQQAQ RQLELQNALA QACSCGELRL VYQPICRLDQ GQPVLMGVEA LLRWQHDGRE
ISPLEFIPCL EESGEILAVG DWVLRQACTQ VRAWQLAGQT QLRCSVNLSS RQLQQGDFAA
RVADVLRETG LPAASLVLEI TESQLMQDSA QNLACLRELA SLGVQLALDD FGTGYSSLGY
LKRFPLHIIK VDKSFIAGTP QDAESLAISR AIIGLGHSLG LTVVAEGVEQ QAQIDFLGRE
GCLYAQGYWF SRPRSPDDLQ RLFSGEDCFD GLWCLLDASP QAVRP
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