| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4446 |
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| Symbol | |
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| ID | 5107141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4875650 |
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| End bp | 4876621 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640505717 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_001189925 |
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| Protein GI | 146309460 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGGCA AATCCTTGGC ATGGGTTCTG TCTGCCGCGC TCGCGGGTAC TACCCTCGGT
GGCATGGCAC AGGCCGAAGA CAAATTCGTC ACCATTGGCA CCGGCGGCCA GACCGGCGTC
TACTACGTGG CCGGCCAGTC CATCTGCCGC TTCCTCAACC GCGGCTCGGC CGAACACGGC
ATCAAGTGCA ACGCGCCTGC CAGCGGCGGC GGCGTGGCCA ACGTCAACGG CATTCGCAGC
GGTGAGTTCA ACTTCGGCAT CATGCAGTCG GACCACCAGT ACAAGGCGCT CAACGGCGCG
GCTCCGTTCG AGGCCGAAGG CGCGATGAGC GACATCCGCG CGGTGTTCTC GCTGCAGAGC
GAGGTGTTCA CCATCCTCGC CCGTCGTGAC GCCAAGATCG CCAGCTTCGA CGATCTCAAA
GGCAAGCGCG TCAACGTCGG CAACCCGGGC TCGGGTCAGC GCGACACCCT GGAAGAGATC
ATGGCCGTCA AGGGCTGGGA CCGTTCCGCC TTCGCTCTGG CTGCCGAGCT GAAGCCGGCC
GAGCAGGCCA GCGCACTGGG CGACAACAAC ATCGACGCCA TGACCTACTT CGTCGGTCAT
CCCAATGGCG CGATCCAGGA AGCCACCACC ACCACCGACG CCGTTCTGGT ACCGGTGACC
GGCGCCGAGA TCGACAAGCT GCTGGCCGAG AAGAGCTACT ACACCAAGGC CGACATCCCC
GGTGGCCTGT ACAAGGGCAA CGACCAGCCG ACCCCGTCGA TCGGCGGCAA GGCCGTGCTC
TCCACCTCGG CCAAGGCCGA CCCGGAAGTG GTCTACCAGC TGGTCAAGTC GGTGTTCGAC
AACATCGAGC GCTTCAAGCG TCTGCACCCG GCCTTCGCCA ACCTGAAGGA AGAGGAAATG
ATCAAGGTCG GCCTGACTGC GCCCCTGCAT GAAGGCGCCG AGCGCTACTA CAAGGAGCGC
GGCTGGCTGT AA
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| Protein sequence | MKGKSLAWVL SAALAGTTLG GMAQAEDKFV TIGTGGQTGV YYVAGQSICR FLNRGSAEHG
IKCNAPASGG GVANVNGIRS GEFNFGIMQS DHQYKALNGA APFEAEGAMS DIRAVFSLQS
EVFTILARRD AKIASFDDLK GKRVNVGNPG SGQRDTLEEI MAVKGWDRSA FALAAELKPA
EQASALGDNN IDAMTYFVGH PNGAIQEATT TTDAVLVPVT GAEIDKLLAE KSYYTKADIP
GGLYKGNDQP TPSIGGKAVL STSAKADPEV VYQLVKSVFD NIERFKRLHP AFANLKEEEM
IKVGLTAPLH EGAERYYKER GWL
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