Gene Pmen_4384 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4384 
Symbol 
ID5107237 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4808463 
End bp4809242 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content61% 
IMG OID640505650 
Productexodeoxyribonuclease III Xth 
Protein accessionYP_001189863 
Protein GI146309398 
COG category[L] Replication, recombination and repair 
COG ID[COG0708] Exonuclease III 
TIGRFAM ID[TIGR00195] exodeoxyribonuclease III
[TIGR00633] exodeoxyribonuclease III (xth) 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.465503 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.053083 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGATCA TCAGTGTGAA CGTGAATGGT ATTCAGGCTG CGGCCGAGCG AGGATTGCTC 
AGCTGGCTGC AAGCCCAGAA TGCCGACGTG ATCTGCCTGC AAGACACCCG TGCCTCCGCC
TTTGAAATGG ACGACCAAGC CTTCCAACTG GATGGTTATT TCCTCTATGC ATGCGACGGT
GAAGTGCCCA GCCAAGGTGG CGTGGCGCTG TATTCGCGTT TGCAACCCAA GGCGGTGATC
AGCGGCCTCG GCTTCGAGAT GGCCGATCGC TACGGGCGCT ACCTGCAGGC AGATTTCGAC
AAGGTAAGTA TCGCCACCCT GCTCCTGCCC ACCGGGCGGG ACGGCGACGA GAGCTTGAAT
CAGAAATTCA AGTTCATGGA CGACTTCACC CATTATCTGG ACAAGCAACG GCGCAAGCGC
CGCGAGTACA TCTACTGCGG TTCGCTGCAC GTGGCGCACC AGAAGCTGGA CGTGAAGAAC
TGGCGCGACT GCCAGCAATC ACCCGGCTTC CTTGCACCCG AACGCGCCTG GATGGATGAA
GTGGTCGGCA ACATGGGCTA TGTCGACGCG CTGCGCGAAG TCAGCCGCGA AGGTGACCAG
TTCAGCTGGT GGCCGGACAA CGAGCAGGCC GAGATGCTCA ACCTGGGCTA TCGCTTCGAC
TACCAACTGC TCACGCCGGG CATGCGCCGC AGCGTGCGCA GCGCACGCCT GCCACGCCAG
CCGCGCTTCT CCCAGCACGC GCCGCTGATC GTCGACTACG ACTGGATTCT CAGCGTCTGA
 
Protein sequence
MRIISVNVNG IQAAAERGLL SWLQAQNADV ICLQDTRASA FEMDDQAFQL DGYFLYACDG 
EVPSQGGVAL YSRLQPKAVI SGLGFEMADR YGRYLQADFD KVSIATLLLP TGRDGDESLN
QKFKFMDDFT HYLDKQRRKR REYIYCGSLH VAHQKLDVKN WRDCQQSPGF LAPERAWMDE
VVGNMGYVDA LREVSREGDQ FSWWPDNEQA EMLNLGYRFD YQLLTPGMRR SVRSARLPRQ
PRFSQHAPLI VDYDWILSV