| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4371 |
|---|
| Symbol | |
|---|
| ID | 5107224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 4793673 |
|---|
| End bp | 4796555 |
|---|
| Gene Length | 2883 bp |
|---|
| Protein Length | 960 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640505637 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001189850 |
|---|
| Protein GI | 146309385 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.433871 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCACC TGCTCCGCTC ACTGCTCGTT CTGCTATGGC TGACCTGCGC CGTCACGGCC
CGGGGCGGCG ACGCGCTGCC GTTGCTGCAG CTGAGCAACG AGCAGCTGAC CACGCCGGTG
AGCATCGAGC ACAGCCTGCT GCTGGAGGAC CCCGGCGCGC AGCTCACCGC CAGCGAGGTG
TTGCAGCGCA TCGGCCGCGA AGGTCGGCCG GTGCAGGGCA CACCGCGCAT CGGCTACTCA
CGCAGCGCCT GGTGGCTGGC CGTGCAGTTG CAGACGCCGC CGGCCGAACG CCTGCAACTG
ATCGTCGGCC AGACCTTCCT CGACGATCTG GAAATCTGGC TGTTCGCCGA TCAGCAACCG
CTCGGCCCGC TGTACAGCGG CTCGCTGCGT CCCTTCAACG AGCGCGGCGA ACCCTATCCA
CAGTTTCTCA TCAGCCTGCC ACGTCTGGGC GAAGGCCCGC ACAACCTGTT GCTGCGCGTG
CAGAGCCACT CGGCGATCAC CCTGCCGCTG CAGCTGGTCG GCGCGCAGCA GGGTCAGCAA
CTGATCGCCC ACAGCTGGCT GCAGAGCGGT CTGCTGGTGG GTGCCCTGCT CGCCCTGGCG
CTGTTCTATC TGCTCAAGTA CAGCACCCTG CGCGAGCCGC AGCTGGCCTA CTTCAGCCTG
ACGGCGCTGT GCGTGGCGTT GTACAACGTC AGCCTGTACA ACCTCAGCGG GCTGCTCTGG
CCGCAGTGGC CACTGCTGCC CAAGTGGCTG GTCAACCTGA CCACCGCCGG CATGCTGATT
TTCAGCTCGC TGTTTCTCGC CAGCGCCCTG CGCCTGGAGC TGGGGCGCCT GCGCTGGCTG
CGCGACGCGC TGTTCGCCGC GGTGCTGCTG GTGTGTCTGG GCGGCCTGGC TATCAGCCAT
GCCTATACCT ACCAGACCCT CAATCTGCTG ATCCTCTGCA CCGGCCTCTA CCAGTTGCTG
GTGATGTGCC TCGGGGTCTA CCAGCGCCGA CCCTACGCGC CGGGTTATCT GCTGTGCTGG
AGCGCGGCGC TGGTGCTGAT GCTGCTGGTG CCGCTGAGCC GGGTCGGCCT GATTCCGCTG
CCGCCAGGCT TCTATGCGCT GTATGCCTAC CTGCCGGCGC TGAGCATGCT GCTGTTCGGC
GCCCTGCTCG ACAAGCAGCT GGAGCGTGTA CGCCGGGTGT TGCTGAGCAG CCAGGCGCAG
GCCATCGACA ACCTGGAGCA GTACCAGGCG CTGTTCCGCC ACAGCGGCGA GGGCATCTTC
CGCTGCGACC GCGACGGCAG GCTGCTGGAA GCCAACCCGA GCCTGGCACG CCTGCTCGGC
GGCGATACGC CGGCCACCCA GCTGGTCGGC CTGCCGCTGC AGCGCCTGCT GGGCGAGGCG
CAGTGGCGCG AGCTGCTGCA GGAGCTCGAC ACCCAGGCCG GTACCGTCAG CTGCGAATGC
CAGCTGCACG ACCTGGCCCA GCGCCCCCTG TGGGTCTACC TGTCGCTGCA TCTGCGCCCT
CAGCGAGACT GCATCGAAGG CATAGTGGTC GATCTCAGCG AGCGCCGCGC GCTGGAAGAA
CGCCTGCAGC AACTGGCCGC GCATGACGCG CTGACCGGCC TGCTCAATCG CCGCGAACTG
GAGAGGCTGC TGTCGGAGAC GCTGGGCGGC ACCGCCAAGC GCCGCTTCAG CCATCTGCTG
CACCTGAGCC TGGATCGCTT CAAGCAGGTC AACGACCTCT GCGGTCACTC CGCCGGCGAC
CAGCTGCTGC GGCAGCTGGC GACCCAGCTC GGCCACCAGC TGCCGCGCCA TGCCGAGCTG
GCCCGCGTCG GCGGCGACGA GTTCGCCGTG CTGCTGCGCG AGGTCGACGA TGAGGCCGCC
CTCAAGCAGG CCGAGGCGCT GCGGCGAGCG GTCGAGCAGT TCGTCTTCAC CTGGCAGGGA
CGGCCCTTCC GCCTGCACAC CAGCATCGGC CTGCTTGCCC TCGGCTCCGG CGTGCGCGAT
TGGGAAACCG CGCTGACCTG GGCCAGCAGC GCCAGTCAGC TGGCCAAGCA CCAGGGCCGC
AACCGCGTGT GCCAGTTCAA CCCGGAAGAT GGCGCACTGC TCGAGCATCA ACGCCAGCTG
CAATGGATCA CCCGCCTGCG CGAAGCCTGC GAGCGCGGTC ACTTCGAGCT GTTCTTCCAG
CCGGTACAGG CCCTGCAAAG CGCTGCCAGC GGCCTGCACT ACGAGGTGCT GCTGCGCTAC
CGCGACCCGG CGAGCGGCGA ATGGGTCAGC CCGGCGCAGT TCCTCGACGC GGCAGCGCGC
TACGACTTCC TCGGCGCCAT CGACCGCTGG GTGATCCAGC ACCTGTGCGC CTGGCTGGCT
GCCAACCCGC GTCATCTGGC GCAGCTGGCC CAGGTCAACG TCAACCTCAG CGCCAGCTCG
CTGCTCGACA GCGCCTTTCA CCAGCTGCTG GAACAGGAGC TGAGTCGGCA CCAGCTGCCG
CCCGGCAAGC TGTGCATCGA AGTCACGGAA ATGGTCGCCC TCGGCGAACT GGGCGTGTCT
GCCCAGTGGA TCGACGAGCT GCGCAGCAAG GGGCTGAAGG TGGCACTGGA CGACTTCGGC
AGCGGCTTCG CCTCCTACGC CTATCTGCGT CACCTGCCGC TGGATATCCT GAAGATCGAC
GGCAGCTTCA TCAGTGGCAT CGAGTCCGAC CCGATCAACC AGGCCATGGT CGGCTCGATG
CGCCAGATCG CCAGCCAGCT CGGCCTGCTC ACCGTCGCCG AGTTCGTCGA GACCCAGGCC
AGCCTGGACT GCCTGCGCCG GCTCGGCATC GACTACGCAC AGGGCTACTT CGTCGGCCGC
CCGCAGCCGC TGCGCCAGCT GGCCGACGAC GCCCGCAGCC GCGGCACTCA GGAAGCCTGG
TAA
|
|---|
| Protein sequence | MVHLLRSLLV LLWLTCAVTA RGGDALPLLQ LSNEQLTTPV SIEHSLLLED PGAQLTASEV
LQRIGREGRP VQGTPRIGYS RSAWWLAVQL QTPPAERLQL IVGQTFLDDL EIWLFADQQP
LGPLYSGSLR PFNERGEPYP QFLISLPRLG EGPHNLLLRV QSHSAITLPL QLVGAQQGQQ
LIAHSWLQSG LLVGALLALA LFYLLKYSTL REPQLAYFSL TALCVALYNV SLYNLSGLLW
PQWPLLPKWL VNLTTAGMLI FSSLFLASAL RLELGRLRWL RDALFAAVLL VCLGGLAISH
AYTYQTLNLL ILCTGLYQLL VMCLGVYQRR PYAPGYLLCW SAALVLMLLV PLSRVGLIPL
PPGFYALYAY LPALSMLLFG ALLDKQLERV RRVLLSSQAQ AIDNLEQYQA LFRHSGEGIF
RCDRDGRLLE ANPSLARLLG GDTPATQLVG LPLQRLLGEA QWRELLQELD TQAGTVSCEC
QLHDLAQRPL WVYLSLHLRP QRDCIEGIVV DLSERRALEE RLQQLAAHDA LTGLLNRREL
ERLLSETLGG TAKRRFSHLL HLSLDRFKQV NDLCGHSAGD QLLRQLATQL GHQLPRHAEL
ARVGGDEFAV LLREVDDEAA LKQAEALRRA VEQFVFTWQG RPFRLHTSIG LLALGSGVRD
WETALTWASS ASQLAKHQGR NRVCQFNPED GALLEHQRQL QWITRLREAC ERGHFELFFQ
PVQALQSAAS GLHYEVLLRY RDPASGEWVS PAQFLDAAAR YDFLGAIDRW VIQHLCAWLA
ANPRHLAQLA QVNVNLSASS LLDSAFHQLL EQELSRHQLP PGKLCIEVTE MVALGELGVS
AQWIDELRSK GLKVALDDFG SGFASYAYLR HLPLDILKID GSFISGIESD PINQAMVGSM
RQIASQLGLL TVAEFVETQA SLDCLRRLGI DYAQGYFVGR PQPLRQLADD ARSRGTQEAW
|
|---|
| |