| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4359 |
|---|
| Symbol | |
|---|
| ID | 5107212 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4777397 |
|---|
| End bp | 4778770 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640505625 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_001189838 |
|---|
| Protein GI | 146309373 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGGTC TGGAACAAAT TCTGGTTATC GCCATGTTCG CCAGCTTCAT GGGGTTGCTG
CTGCTCGGCT TTCCCGTGGC CTGGTCGCTG GCAGGGGTCG GCCTGATCTT CGCGGTCGTC
GGCCATGTGC TGGTGAACTA TTTCGACGCC GAACTCTGGT TCACCTGGAG CGGCACCATC
GGCGTGCTGG ACGCGCGCAT CTACGGCATC GTCGCCAACG AGCTGATGGT GGCGCTGCCG
CTGTTCATCT TCATGGGCAT CATGCTCGAC CGCTCCGGCA TTGCCGAGCG CCTGATGCAC
AGCCTGGTGC GCGTGCTCGG CCCGCTGCGC GGCGGCTACG CCATCACCGT GGTCATCGTC
GGCGTGCTGC TGGCCGCCTC CACCGGCATC GTCGGTGCCT CGGTGGTGCT GCTCGGCCTG
CTCTCGCTCG GCCCGATGCT GCAGGCCAAC TACAACAAGA GCCTGGCGGT GGGCACGGCC
TGCTCGGTGG GCACCCTGGG CATCCTGGTG CCGCCGAGCA TCATGCTGGT GCTGATGGCC
GACCGCCTGG GTACGCCGGC GGCTTCGGTC GGCAAGCTGT TCATGGGCGC GCTGATCCCG
GGCATGCTGC TCGGCGTGCT CTACGTGCTG TACATCCTGA TCGCCGCCTG GCTGAACAAG
GACTTCGCCC CGGCGCCGAA GGATCGTCAG CCACTGGACA TGCGCGCCCT GCTCGACGTG
CTGCTGGCCG TGGTGCCACC GCTGGGGCTG ATTCTCGCCG TGCTCGGCTC GATCTTCTTC
GGCATCGCCA CCACCACCGA GGCCTCGGCC GTGGGCGCGG CCGGCGCGGT GCTGATGGCC
TGGTTCAGCC GGCGCCTGAA TCTGGCGGTG GTCAAGGACG CGCTGTACCA GACCAGCCGC
ACCACCGCGT TCATCTTCGG CATCTTCATC GGCGCCACGG TGTTCGCCGC GGTGCTGCGC
GGCCTCGGCG GCGACGACGT GGTGCGTGCG GCGCTGACCA GCCTGCCGTT CGGCCAGACC
GGCGTGCTGC TCACCGTCCT GTTCATCACC TTCCTGCTGG GCTTCTTCCT CGACTGGGTG
GAGATCACCC TGATCGTCCT GCCGCTGGTG GCGCCGGTGC TGTTCGCCAT GGGCGTGGAC
CCGCTGTGGT TCGCCATCCT CTTCGCCCTG TGCCTGCAGA CCTCCTTCCT CACCCCGCCG
GTGGGCTTCG CCCTGTTCTA CATCAAGGGC GTGTGCCCGC CGGGGATCAC CACTCGGCAT
ATCTACCTGG GGGTGCTGCC GTTCATTGCC CTGCAACTGC TCGGCCTGGC CCTGGTGTTC
CATTTCGAGG CCCTGGCCAC CTGGTTGCCC AACGAGGTGT ATGGCGGCCC GTGA
|
|---|
| Protein sequence | MMGLEQILVI AMFASFMGLL LLGFPVAWSL AGVGLIFAVV GHVLVNYFDA ELWFTWSGTI
GVLDARIYGI VANELMVALP LFIFMGIMLD RSGIAERLMH SLVRVLGPLR GGYAITVVIV
GVLLAASTGI VGASVVLLGL LSLGPMLQAN YNKSLAVGTA CSVGTLGILV PPSIMLVLMA
DRLGTPAASV GKLFMGALIP GMLLGVLYVL YILIAAWLNK DFAPAPKDRQ PLDMRALLDV
LLAVVPPLGL ILAVLGSIFF GIATTTEASA VGAAGAVLMA WFSRRLNLAV VKDALYQTSR
TTAFIFGIFI GATVFAAVLR GLGGDDVVRA ALTSLPFGQT GVLLTVLFIT FLLGFFLDWV
EITLIVLPLV APVLFAMGVD PLWFAILFAL CLQTSFLTPP VGFALFYIKG VCPPGITTRH
IYLGVLPFIA LQLLGLALVF HFEALATWLP NEVYGGP
|
|---|
| |