| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4311 |
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| Symbol | |
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| ID | 5107085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4720291 |
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| End bp | 4724166 |
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| Gene Length | 3876 bp |
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| Protein Length | 1291 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640505577 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001189790 |
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| Protein GI | 146309325 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCCGA GGCTGAGCCA CCGCTGGTTT GGGCAATGGC TGTTCAGCCG CTGGGACGCC
GGCCGCCGGG ACGCCGGTCG CTGGATAGTC ATTGGCGGCA GTCTGTGCCT GGCCCTGTTC
TTCGCCTTTC TGGGACGCCA GGCGCTCAAC GAGCGCGAAG CCCTCTGGCA ACTGCAGATG
GGCAAGCAGG CGGACATTCA GCGCATGGCC CTGAACAGCA CCCAGCACGG GCTGCAGGAG
CGCACGCAGC TGCTCGCCGA AACCATTGCC GCCGACGCCT GGGTCACCGA ACTGGTGCGC
CAGGCCCACG CCCTGCCGGC GAGCGACCTG GAAGGTCTGG CCAGCATTCG CAGCCAGCTT
TACACCCGCC TGGCGCCACG CTGGCGCAAC CTGCAGGCGC ACCAGCCGTT TCGCCTGTAC
GTGCATCTGG CGCCGGACAT CAAGGTGCTG CTGCGGGTAC ACGAGCCCGA ACACTTCGGC
GACTTGCAGA TCGGCTGGCG CCCCATGGTG CAGGAAGCGC TGCGCAGCGC CAGCAGCCAG
GCCGGCCTGG GCCTGACCCG CGGCAGCATC GGCATGCGCG CCATTGCCCC TTTGTTGGCC
GAAGGCAAGC ATGGCGCCGA GCAGGTCGGA GCCATCGAGG TGGCCATGGG CGTGCTGGAG
AACCTTGCCC AGCTGGACCG CGAGTTCAAC AGCGGGGTGG CCCTGCTGCT ACGCGAGGAT
CTCCTGCTGG GTTCGGGCAG CGGCGAAGAG TTGCGCGGCC TGGCCAGCGA TGCCCAGCGC
TGGCAGCTGA TGGACTACTC GCGGCAGCAG GTGCTGGCCT GGCAAGAGCA ACGGAGGCTG
CCCGCGCCCG AGGAGGGCGA CAGCGTACGC CTGCTGGACC ACGGCGAGCG CCACTACCTG
GTCAATCAGG TGGCGCTCAG CAGCTACCGC CAGGCTCACC AGCGGAGCGA CGAGCCGCTG
GCGGTGGCCC TGATCTGGCA TGACATCAGC GACCAGTACA ACGTGCACCG GCGCGACAAG
CGCTGGCTGG TGATCAAGTG GCTGCTCGCC TGGTGCGGTG CCGAGGCCCT GCTGCTGGGC
CTGTTGCGCA GCACCCAGCG CAGCACCCAG CGCCTGATGC AGCGCCAGCA GGCCGCGCTG
CGTGCGCTCA ACGAGATCGC CGCGCTACCC AGCCTGAGCC GCACCGAGCA ACTGCGCCAG
GCACTGCGTC TGGGCGCCGA GCATTTCGGC ATGCCGCTGG GCATCATCAG CCGCATCGAA
GGCGAGCGAT ACCAGGTAGT GGTGCAGGTC TCCCCCGACG GCGCGCTGAG TGATGGCCAG
CAATTCGAGC TGGGTGATAC CTACTGCAGC CTGGCGCTGC AGCAGGACGA GGCACTGGCC
ATCACCCACA TGGCCGACTC GCCGCATCGA CGCCATCCCT GCTATCGCCA GTTCGCCCTG
GAAAGCTACA TCGGCACCGC CGTGCGCGTG GCCGGCAAAC CCTTCGGCAC CCTGGCCTTC
GCCAACCCGG AGCCACGCAG GCGGCCGTTC GACGCCGCCG ACCGCGACTT TCTCGGTCTG
TTCGCCCGCT GGGTCGGCGC CATTCTGGAG CGCCAGCAGC AGGAACGCGC CGTACGCGCG
GCACGCGCCT ACCTGCAGGC GGTACTGGAC TCGGCCACCG GGGTGTCGAT CATCGCCACC
GACACAAGCG GCACCATCAG CCTGTTCAAT TCCGGCGCCG AACGCCTGCT GGGCTACGGC
GCCGCAGAGA TGATCGGGCG CCAGACGCCG GCGATCATCC ACCTTGAGGA AGAAGTCCAG
GCCCGTGCCG CCGAGCTGAG CGAGGCCAGC GGCCACGCGG TGGAGGGCTT CGAAGTCTTC
GTGCACAACG CCCGCGGCGG CGAGCCGGAA ACCCGCCAGT GGACCTACCG CCACAAGGAC
GGCGGCCTGC GCCAGGTCAA CCTCACCGTC AGTGCCATAT TCGACGAGAA CGGTCAGATC
ACCGGCTTTC TCGGTATCGC CAGCGACATC AGCGAGCTGC TGCAGACCAC CCGCGCGCTG
CAGAAAAGCG AAAGCCGCTT CCGCGGCCTG GTGGCCAACC TGCCCGGCGT GGTGTACCGC
TGCGCCAACG ATAGCCAATG GAGCATGCGC TACGTCAGCG ACGAGATCCG CAACCTCTGC
GGCTACCCGG CCAGCGACTT CATCGACAAC CGCGTACGCA GCTTTTCCAG CATCGTTCAT
CCCGACGACC TGGCCATTAC CTTCCGTGCC GGCGAGGCCA TCGAGCGCCA GGAGAGCTTC
GAGCTCACCT ACCGCCTGCG CCATGCCGAC GGCCACAACG TCTGGGTGCG CGAGAAGGGC
CGTGGCGAGT ACGACGGCCA GGGCCATCTG CTGTGGGTCG ACGGCTTCAT CTGGGACATC
AGCGAACGCC AGGCCATGGA GGACGAGCTG CGGCTGAGCC AGCAGCGCTT TCTCAACGCC
TTCAACACCG CGCCCCAGGG CATGGCGCTG GTCGGCCCGG ACGGCCGCTG GCTGGAAGCC
AATGACGAGC TGTGCCGCAT GCTCGGCTAC AGCCGCGAAG AGCTGCTGGC CTGCACCTAC
CAGCAGGTCA CCCATCCCGA TGACCTGGAT GCCGACCGAC AGAACATGGA GGACCTGCTG
GCCGGACGGA TCAACGCCTA CCAGATGGAG AAGCGCTACC TGGACAAGCA GGGGCGCATC
CTGTGGGTCC TCCTCAGCGT GTCGCTGGTA CGCGACAGCG AGGGGCGCCC GGTGCATTTC
GTCTCGCAGA TCCAGGACTT CAGCGACCGC GTCGCCGCCG AACGCGCGGT ACGCGAGCGC
GAACACTACC TCAGCACCCT GCTCGACAAC GTGCTCGACG CCATCGTCAC TATCGACGAA
CAGGGCCGTA TCGAGACCTT CAACCACGCC GCCGAAGCCA TATTCGGCTA CCGCCAGAGC
GAGGTGGCCG GACACAACGT GCGCCTGCTG ATGCCGGAGC CCTACCGCAG CGCCCATGAC
GGCTACATCC AGCGTTACCT GCGCACTGGC GAGGCCTGGG TCATAGGGCA GGCGCGCGAG
CTCGAGGGCA TGCGCCAGAA CGGCGAGCGC TTCGCCATGG AGCTGGCCGT GTCGCAGATC
AGCCACCAGG GCCAGCGGCG CTTCATCGCG GTGATTCGCG ACATCGCCGA GCGCAAGCGC
ATCGAACTGA TGAAGAACGA GTTCGTCTCC ACCGTCAGCC ACGAGCTGCG CACCCCGCTC
ACCGCCATCG CCGGCTCGCT CGGCCTGATC AATGGCGGCG CCCTCGGTGC CGTTCCCGAC
AACATGCGGC AGATGCTGGC CATCGCCCAC AGCAACAGCC AGCGCCTCAG CGCGCTGATC
AACGACCTGC TGGACATGGA CAAGCTGGTG GCCGGCAAGA TGCATTTCGA CCTGCAGGCG
CGGACACTGC AACCGCTGCT GGAACAGGCG CTGCTGCACA ATCAGCCCTA TGCCGAGCAG
CATCAGGTCG AGCTGCGCCT GCAGGTCGAG GACGATGCCC AGGTGCGGGT CGACGCCCAG
CGCCTGGCGC AGGTGATGGC CAACCTGCTG TCCAATGCCG CCAAGTTCTC GCCGCCGGGC
ACCTGCGTCG ACGTGCGCCT GCAGCATGGC GGCGAGGTAC TGCGCGTCAG CGTGACAGAC
AGCGGCCCCG GCATACCGGA AGCGTTCAAG CCGCGCATCT TCAGCAAGTT TTCCCAGGCC
GACTCCGGCG ACACCCGGCA ACAGGGCGGC ACCGGCCTGG GTCTGGCGAT CTGCAAGGAA
ATCATCGAGC GCATGGGCGG ACACATCGGT TTCGACTCCT CGCCCGGTCA AGGTGCTACC
TTCTGGTTCG AACTACCGAT CACAGGGAGT GCGTGA
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| Protein sequence | MTPRLSHRWF GQWLFSRWDA GRRDAGRWIV IGGSLCLALF FAFLGRQALN EREALWQLQM
GKQADIQRMA LNSTQHGLQE RTQLLAETIA ADAWVTELVR QAHALPASDL EGLASIRSQL
YTRLAPRWRN LQAHQPFRLY VHLAPDIKVL LRVHEPEHFG DLQIGWRPMV QEALRSASSQ
AGLGLTRGSI GMRAIAPLLA EGKHGAEQVG AIEVAMGVLE NLAQLDREFN SGVALLLRED
LLLGSGSGEE LRGLASDAQR WQLMDYSRQQ VLAWQEQRRL PAPEEGDSVR LLDHGERHYL
VNQVALSSYR QAHQRSDEPL AVALIWHDIS DQYNVHRRDK RWLVIKWLLA WCGAEALLLG
LLRSTQRSTQ RLMQRQQAAL RALNEIAALP SLSRTEQLRQ ALRLGAEHFG MPLGIISRIE
GERYQVVVQV SPDGALSDGQ QFELGDTYCS LALQQDEALA ITHMADSPHR RHPCYRQFAL
ESYIGTAVRV AGKPFGTLAF ANPEPRRRPF DAADRDFLGL FARWVGAILE RQQQERAVRA
ARAYLQAVLD SATGVSIIAT DTSGTISLFN SGAERLLGYG AAEMIGRQTP AIIHLEEEVQ
ARAAELSEAS GHAVEGFEVF VHNARGGEPE TRQWTYRHKD GGLRQVNLTV SAIFDENGQI
TGFLGIASDI SELLQTTRAL QKSESRFRGL VANLPGVVYR CANDSQWSMR YVSDEIRNLC
GYPASDFIDN RVRSFSSIVH PDDLAITFRA GEAIERQESF ELTYRLRHAD GHNVWVREKG
RGEYDGQGHL LWVDGFIWDI SERQAMEDEL RLSQQRFLNA FNTAPQGMAL VGPDGRWLEA
NDELCRMLGY SREELLACTY QQVTHPDDLD ADRQNMEDLL AGRINAYQME KRYLDKQGRI
LWVLLSVSLV RDSEGRPVHF VSQIQDFSDR VAAERAVRER EHYLSTLLDN VLDAIVTIDE
QGRIETFNHA AEAIFGYRQS EVAGHNVRLL MPEPYRSAHD GYIQRYLRTG EAWVIGQARE
LEGMRQNGER FAMELAVSQI SHQGQRRFIA VIRDIAERKR IELMKNEFVS TVSHELRTPL
TAIAGSLGLI NGGALGAVPD NMRQMLAIAH SNSQRLSALI NDLLDMDKLV AGKMHFDLQA
RTLQPLLEQA LLHNQPYAEQ HQVELRLQVE DDAQVRVDAQ RLAQVMANLL SNAAKFSPPG
TCVDVRLQHG GEVLRVSVTD SGPGIPEAFK PRIFSKFSQA DSGDTRQQGG TGLGLAICKE
IIERMGGHIG FDSSPGQGAT FWFELPITGS A
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