| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4295 |
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| Symbol | |
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| ID | 5107069 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4702921 |
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| End bp | 4703913 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640505561 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001189774 |
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| Protein GI | 146309309 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 0.823966 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAAAC TGTCTGCCAA GGCGCTGGTC TGCGCCCTGT CCCTGTCCAT CGCTGGCGTG
GTTCACGCTG CCGATCCGAT CGTCATCAAG TTCTCCCATG TGGTTGCCGA GCACACCCCG
AAAGGTCAGG GTGCCGTTCT GTTCAAGCAA CTGGCCGAGG AGCGTCTGGC TGGCAAGGTC
AAGGTCGAGG TCTACCCGAA CTCCTCGCTG TTCGGCGACG GCAAGGAAAT GGAAGCGCTG
CTGCTCGGTG ACGTGCAGAT GATCGCCCCG TCCCTGGCCA AGTTCGAGCA TTACACCAAG
CAGCTGCAGG TGTTCGACCT GCCGTTCCTG TTCGACGACA TGGCTGCGGT GGATCGCTTC
CAGAAGAGCG CTGAAGGCCA GAAGCTGCTG ACCTCCATGA CCGACAAGGG CATCACCGGC
CTGGCCTACT GGCACAACGG CCTGAAGCAG CTGTCGGCCA ACAAGCCGCT GCTCGAGCCC
AAGGACGCCC GTGGTCTGAA GTTCCGCGTA CAGGCTTCCG CAGTGCTGGA AGAGCAGTTC
AAGGCCGTGC GCGCCAACCC GCGCAAGATG AGCTTCGCCG AGGTCTATCA GGGCCTGCAG
ACTGGCGTGG TCAACGGTGC CGAGAACCCC TACTCGAACA TCTACAGCCA GAAGATGCAC
GAAGTGCAGA AGTACATCAC CGAGTCCAAC CACGGCCTGC TCGACTACAT GGTGATCACC
AACACCAAGT TCTGGGACGG CCTGCCGGCA GACGTGCGTG ACGAGCTGAG CAAGATCATG
GACGAGGTCA CCGTCGAGGT GAACAAGCAG GCTGACGCCC TCAACGAAGG CGACAAGCAG
CGTATCCTCG AAGCCGGCAG CACCGAAATC CTGACGCTGA CTCCGGAGCA GCGCAATCAG
TGGCGCGAAG CCATGCAGCC GGTATGGAAG AAGTTCGAAG GCGAGATCGG CGCCGATCTG
ATCAAGGCTG CACAAGCGGC CAACCAGCAG TAA
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| Protein sequence | MFKLSAKALV CALSLSIAGV VHAADPIVIK FSHVVAEHTP KGQGAVLFKQ LAEERLAGKV
KVEVYPNSSL FGDGKEMEAL LLGDVQMIAP SLAKFEHYTK QLQVFDLPFL FDDMAAVDRF
QKSAEGQKLL TSMTDKGITG LAYWHNGLKQ LSANKPLLEP KDARGLKFRV QASAVLEEQF
KAVRANPRKM SFAEVYQGLQ TGVVNGAENP YSNIYSQKMH EVQKYITESN HGLLDYMVIT
NTKFWDGLPA DVRDELSKIM DEVTVEVNKQ ADALNEGDKQ RILEAGSTEI LTLTPEQRNQ
WREAMQPVWK KFEGEIGADL IKAAQAANQQ
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