| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4146 |
|---|
| Symbol | |
|---|
| ID | 5105665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 4549605 |
|---|
| End bp | 4550816 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640505410 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_001189625 |
|---|
| Protein GI | 146309160 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4277] Predicted DNA-binding protein with the Helix-hairpin-helix motif |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTGA TCGACAAGCT CACCATCCTC GCCGACGCCG CCAAGTACGA TGCCTCCTGC
GCCAGCAGCG GCGCGCCCAA GCGCAGCTCC AAAGGCAAGG ACGGCATCGG CTCGACCAAC
GGCATGGGCA TCTGCCACAG CTACACGCCG GACGGACGCT GCGTGGCGCT GCTGAAGATC
CTGCTGACCA ACTTCTGCCT GTACGACTGC CAGTACTGCA TCAACCGCCG CTCCAGCGAC
GTGCCGCGTG CGCGCTTCAC CCCCGAGGAA GTGGTCACCC TGACCCTGGA CTTCTACAAA
CGCAACTGCA TCAGCGGCCT GTTCCTCAGC TCCGGCATCA TCCGCTCGGC CGACTACACC
ATGGAACAGC TGATCCGCGT CGCCAAGCTG CTGCGTCAGG AACATCAGTT CCGCGGTTAC
ATTCATTTGA AGACCATCCC CGATGCCGCG CCGGAACTGA TCGCCGAGGC CGGCCTGTAT
GCCGACCGCC TCAGCGTCAA TATCGAACTG CCCACCGAAA CCAGCCTGGT GCGCCTGGCG
CCGGAAAAGA ACGTCGGCAG CATTCACCAG GCCATGCACA GCATCCACCA GGGCGAGCGC
GAGGCCCAGG AGGAGCGCCG CGCGCCGCGC TTCGCCCCGG CCGGGCAAAG CACGCAGATG
ATCATCGGCG CCGACGCCAC CGATGACAGC ACCATCCTGC ACAACGCGCA GAGCCTGTAT
CAGGACTATC GCCTGCGCCG CGTCTACTAC TCGGCCTTCA GCCCCATCCC GCAGAGCCCG
AAAACCGTGC CGTTCGAGGC GCCGCCCCTG CTGCGCGAGC ATCGCCTGTA CCAGGCCGAT
TTCCTTATGC GCGGCTATGG CTTCAGCGCC ACGGAGCTGC TGGCCGGCCC CGGCAACCTG
GCGCTGGATA TCGACCCCAA GCTGGCCTGG GCGCTGGCTA ATCGCGAGCA GTTTCCGGTG
GACCTGAACC GCGCCGATGA GTCGCTGATC GCCCGCGTGC CCGGTATCGG CGTGCTCAGC
GCCAGGCGCC TGGGCGCACT GCGCCGCGAA CGGCGCATCC GCTATGAGGA TCTGACCCGC
CTGCGCTGCG TGCTGGAAAA GGCCAAGCCC TTCATCGTCA CTCAGGATTA CCGGCCACCG
CGGGCCGAAC ACGAATCCCT GGTGCTGCGC CAGCAGTTGC GCGACACCCC GGCGCAGATG
GCGTTGTGGT GA
|
|---|
| Protein sequence | MQLIDKLTIL ADAAKYDASC ASSGAPKRSS KGKDGIGSTN GMGICHSYTP DGRCVALLKI
LLTNFCLYDC QYCINRRSSD VPRARFTPEE VVTLTLDFYK RNCISGLFLS SGIIRSADYT
MEQLIRVAKL LRQEHQFRGY IHLKTIPDAA PELIAEAGLY ADRLSVNIEL PTETSLVRLA
PEKNVGSIHQ AMHSIHQGER EAQEERRAPR FAPAGQSTQM IIGADATDDS TILHNAQSLY
QDYRLRRVYY SAFSPIPQSP KTVPFEAPPL LREHRLYQAD FLMRGYGFSA TELLAGPGNL
ALDIDPKLAW ALANREQFPV DLNRADESLI ARVPGIGVLS ARRLGALRRE RRIRYEDLTR
LRCVLEKAKP FIVTQDYRPP RAEHESLVLR QQLRDTPAQM ALW
|
|---|
| |