| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4135 |
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| Symbol | |
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| ID | 5105654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4535256 |
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| End bp | 4536479 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640505399 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001189614 |
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| Protein GI | 146309149 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00592356 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 0.777233 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATGC AGCCTGTCCT GTCGGTGCGT GGCGTGGATG GTGCGGCAGC GAGGCGTGGC
AAGGCCGGGG CGTCATCCGG CACCTGTCAC TCCGCTGTCC TCGGGTTGTT GGCCGGTAGT
CTGTCATTGC TCGTGCTTCC CGCGTGGGGG GAAGAGTTCT CGCGCAACCA GCAGGCCACG
TTTGATGCGA TCTCTTCGTC GTCAAGCAAC AGTATTCTTG CCTCGATTCT TTCCGACCTC
TCCGGGAGCG AGGCGACGGA TCTGCTCGAC CGGCTTTCCG GCGACGCCCA TGCCGGTTAC
GTCTCATCGC TCATGCTGGC GGACCTGGAC CTGCTCCAGG CGCCGCTCGG CAATCTACGT
CGCAACCTGT CCGATCCCGA TGGTGGCCTG CCGTACTGGA TCCGGGCTTA CCGGGGCCAG
TCACGCCTCG ATGACGATGG CAATGCCGGC AAGGCCAAGC AGAAGTTCGA CGGCATGATG
CTCGGCGGCG ATCTGCCCAT CTCTGGGGAC TGGCGGCTCG GTGCTGCATT CGGTTACGGC
GACGAGCGTC TGGATGTCGA CTCGCGCGAT GCGAAGGCTG ACTCCGACAG CTACCGCTAC
GCGCTCTATG GCGGGCGGGA TCTGGGCCTG GCTGTCGGCG CGCTGAAGTT TTCCGGCGGG
GCGGGCTACA GCCGGCACGA AATCGACAGT CGGCGCAGCG TCGATGTGAT CTTTTTCGAG
GAGGAGTTCC TCACCCGGCG CTACGACGTG ACCACCCGGC AGGCCTTCGG CGAGCTGGCC
TACCATCTCG ACTTCAGCAA ACCGGCTTAT GTCGAGCCGT TCTTCGGCCT TCTCTCTCTG
GAGCAGCGCA GTGACAGCTT TCAGGAGCGC GGTGGCGAGG CGGCGTTGTC TGCGCAGAGC
CAGCGCAACC GGTTGTTGAG TACCAGCACC GGGGTACGCG GGCAGCAGGT GTTCCAGGTG
GTGGGGCGGG AGCTGCTGCT ATATGGCTCA TTCACCTGGC GTCAGCTCAA CGGCGATCTG
CGCCCGGAAA TGCAATTCAG CTTCGAAGAT GGCGACAGCT TCAAGGTGCG CGGCAACGAG
TTGCCGCGCA ACAGCTATCT GGTGGAGCTC AACGCGGATT ACAAGCTGAC GCCGAATATC
GTGCTGGATG TCGATTACAG CGGCGTGTTC AGCGACAGCA GTCGCTCCAA CAGCTTTGCG
GTCAACCTGC GCTGGAAGAT GTAG
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| Protein sequence | MTMQPVLSVR GVDGAAARRG KAGASSGTCH SAVLGLLAGS LSLLVLPAWG EEFSRNQQAT
FDAISSSSSN SILASILSDL SGSEATDLLD RLSGDAHAGY VSSLMLADLD LLQAPLGNLR
RNLSDPDGGL PYWIRAYRGQ SRLDDDGNAG KAKQKFDGMM LGGDLPISGD WRLGAAFGYG
DERLDVDSRD AKADSDSYRY ALYGGRDLGL AVGALKFSGG AGYSRHEIDS RRSVDVIFFE
EEFLTRRYDV TTRQAFGELA YHLDFSKPAY VEPFFGLLSL EQRSDSFQER GGEAALSAQS
QRNRLLSTST GVRGQQVFQV VGRELLLYGS FTWRQLNGDL RPEMQFSFED GDSFKVRGNE
LPRNSYLVEL NADYKLTPNI VLDVDYSGVF SDSSRSNSFA VNLRWKM
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