| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4046 |
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| Symbol | |
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| ID | 5106343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4427124 |
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| End bp | 4428125 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640505310 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001189525 |
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| Protein GI | 146309060 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTCA AGCGACTCTT CTCCGCGCTC GCCGTCGGCG CTGCGCTGAC TGCCCTGTGT
GCCACCGCGC AGGCGCGTGA ATACTCCGTT TCCACCGTGC TTTCCGACGC CTTCCCCTGG
GGCCAGGCTG CGCAGAAATG GGCCGACCTG GTCAACGAGC GCTCCGCAGG GCGCATCACC
CTGCGCGTGT ACCCCAATGC ACAACTGGTC GCCGGCGACC AGACCAAGGA ATTCTCCGCC
ATGCGCTCGG GCCTGATCGA CATGGCCGTG GGCTCGACCA TCAACTGGTC GCCGCAGGTG
CCGGAGCTCA ACCTGTTCTC CCTGCCGTTT CTGATGAAGA GCGATGCCGA CCTCGACGCC
ATCACCCAGG GCGAAGCCGG CAAGCTGGCC TTCGCCGCCA TCGAGCAGCG CGGCATCGTG
CCGCTGGCCT GGGGCGAGAA CGGTTTCCGC CAGCTGTCCA ACTCGGCCAG GCCGGTGCGC
AGCCCGGCCG ACATGGCGGG CCTGAAGATC CGCGTGGTCG GCTCGCCACT GTTCCAGGAC
ACCTTCACCG CGCTCGGCGC CAACCCCACG CAGATGAGCT GGGCCGACGC CAAGCCGGCC
CTGACCACCG GCGCGGTGGA CGGCCAGGAA AACCCGCTGT CGGTCTTCGA CGTGGCGCGC
GTCGACCAGG TCGGCCAGAA GTACCTGACC CTGTGGGACT ACATGGCCGA CCCGCTGGTG
TTCGCCGTCA ACCAGCGCGT GTGGAAAGGC CTGCCCGAGG AAGATCGCGA ACTGCTGCGC
CAGGCGGCCA TCGACGCCGG CAAGTGGGAG ATCGAGCTGT CGCGTGGCGC CCAGGCCCAG
CGCCTGGCCG ATGTGCGTGA GCGCGGTGTG GACGTGATCG AGCTGAGCGA CGCCGAGCGC
GCCGCCTTCG TCGAAGCCAC TGCCAGCGTG CAGGAGAAAT GGGCACCGCG CATCGGCGAC
GCGCTGATGG ACGCCGCGCG CAAGGCCGTG GCCCAGCCCT GA
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| Protein sequence | MKLKRLFSAL AVGAALTALC ATAQAREYSV STVLSDAFPW GQAAQKWADL VNERSAGRIT
LRVYPNAQLV AGDQTKEFSA MRSGLIDMAV GSTINWSPQV PELNLFSLPF LMKSDADLDA
ITQGEAGKLA FAAIEQRGIV PLAWGENGFR QLSNSARPVR SPADMAGLKI RVVGSPLFQD
TFTALGANPT QMSWADAKPA LTTGAVDGQE NPLSVFDVAR VDQVGQKYLT LWDYMADPLV
FAVNQRVWKG LPEEDRELLR QAAIDAGKWE IELSRGAQAQ RLADVRERGV DVIELSDAER
AAFVEATASV QEKWAPRIGD ALMDAARKAV AQP
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