Gene Pmen_3983 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3983 
Symbol 
ID5110206 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4361321 
End bp4362043 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content58% 
IMG OID640505246 
Productputative phage repressor 
Protein accessionYP_001189462 
Protein GI146308997 
COG category[K] Transcription 
COG ID[COG2932] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000900431 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.128218 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAACTT TAGGTCAACG ATTAAAGCGC CTGCGCAAAG CAAAAGGCAT GAGCCAGCAG 
GCTCTAGCCG AAGAATGCGG CTGGGCGTCG CAATCTCGCA TTGGCAACTA CGAGGCCGAC
CTGCGAGCCC CGTCATTAAG CGATCTCTTG CTAATCGCAC CCGCACTCGG AGTTAGCCTC
GCCGAGCTCG CTGGCAGCGA TGAATGGACC GGCGCATATG GCGTTCAGGT TCAGGTCAAG
AACCACCAGG TCAGAGAGAG CGTCGGCGCT GAGACAATAG AGGCAGGAAC CGCCAAGGAG
GGGGCAGTAC CGGTGGTGGG TAACGCGAAG CTCGGAACAG ACGGCTATTT CGAAGCCGTA
GATTTCCCCG TAGGTCACGG CGACGGCTAC TTGCTGATTC ACAGCGACGA CCCGAACGCC
TATGGGCTCA AGGTGCTGGG CGACAGCATG CATCCTAGGA TCAAGAACGG CGAATACGTC
CTGATCGAGC CCAACAAAGT GTTCACCTCG GGCGACGAAG TGATGGTCAA GACGAAAGAC
GGCCAGGCGA TGATCAAAGA GTTCATCTAC CTGCGCGACG GCATGTACCG GTTCGACAGC
GTCAACCAGA GCCACCAACC CATCCACCTG CCAGAGGACG CGATCGACAA GATCCACTTG
GTCGGCGGCA TCCTCAAGTC ATCTCGCTTC ACGCACGACT ACCACACGGC CAGAAAGAAA
TAA
 
Protein sequence
METLGQRLKR LRKAKGMSQQ ALAEECGWAS QSRIGNYEAD LRAPSLSDLL LIAPALGVSL 
AELAGSDEWT GAYGVQVQVK NHQVRESVGA ETIEAGTAKE GAVPVVGNAK LGTDGYFEAV
DFPVGHGDGY LLIHSDDPNA YGLKVLGDSM HPRIKNGEYV LIEPNKVFTS GDEVMVKTKD
GQAMIKEFIY LRDGMYRFDS VNQSHQPIHL PEDAIDKIHL VGGILKSSRF THDYHTARKK