Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3944 |
Symbol | trpC |
ID | 5110167 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4329623 |
End bp | 4330462 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640505207 |
Product | indole-3-glycerol-phosphate synthase |
Protein accession | YP_001189423 |
Protein GI | 146308958 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0134] Indole-3-glycerol phosphate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCGTGC CAACCGTACT GGAGAAGATC GTCGCCCGTA AGTTCGAGGA AGTGGCCGCG CGCCGCGTCC AGGTCAGCCT CGCCGAACTG GAAGCGGCCG CCCGCGCCGC CGATGCCCCG CGCGGCTTTG CCCGCGCGCT GCTGGAGCAG GCGGCGCGCA AGCAGCCGGC GGTGATTGCC GAGATCAAGA AGGCCTCGCC GAGCAAGGGC GTGCTGCGCG CCGACTTCGT GCCCGCCGAT ATTGCCCGCA GCTACGAGGC CGGCGGTGCC ACCTGCCTGT CGGTGCTGAC CGATATCGAT TTCTTCCAGG GTGCCGATGA ATACCTGCAG CAGGCTCGCG CCGCCTGCGC GCTGCCGGTG ATCCGCAAGG ATTTCATGGT CGATCCCTAC CAGATCGTCG AGGCCCGCGC CCTCGGCGCC GATTGCGTGC TGCTGATCGT GTCCTGCCTG GATGACGTGC GCATGGCCGA ACTGGCCGCG GTGGCCAAGG ATGTCGGCCT CGACGTGCTG GTGGAGGTGC ATGATGGCAA CGAACTGGAG CGCGCGCTCA ATACCCTGGA TACGCCGCTG GTAGGGATCA ACAACCGTAA CCTGCACACC TTCGAGGTCA GCCTGGAAAC CACTCTGGAT CTGCTGCCGC GCATTCCGCG TGAGCGCCTG GTGGTGACCG AGAGCGGCAT TCTCAACCGC GCCGATGTCG AGCTGATGGA GATCAGCGAG GTGTATGCCT TCCTGGTCGG CGAGGCTTTT ATGCGGGCTG AGAGCCCCGG GGCCGAGCTG CAGCGTCTGT TCTTTCCCGA GCGTGGGCGG CCGACGGTGG TCGGCAAGGA CCCCGAGTAA
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Protein sequence | MSVPTVLEKI VARKFEEVAA RRVQVSLAEL EAAARAADAP RGFARALLEQ AARKQPAVIA EIKKASPSKG VLRADFVPAD IARSYEAGGA TCLSVLTDID FFQGADEYLQ QARAACALPV IRKDFMVDPY QIVEARALGA DCVLLIVSCL DDVRMAELAA VAKDVGLDVL VEVHDGNELE RALNTLDTPL VGINNRNLHT FEVSLETTLD LLPRIPRERL VVTESGILNR ADVELMEISE VYAFLVGEAF MRAESPGAEL QRLFFPERGR PTVVGKDPE
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