| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3916 |
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| Symbol | rpoB |
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| ID | 5106450 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4295874 |
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| End bp | 4299947 |
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| Gene Length | 4074 bp |
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| Protein Length | 1357 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640505170 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001189395 |
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| Protein GI | 146308930 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTACT CATACACTGA GAAAAAACGT ATCCGCAAGG ACTTTAGCAA GTTGCCGGAT
GTCATGGATG TGCCTTACCT CCTGGCCATC CAGCTGGATT CCTATCGCGA ATTCCTGCAG
CAAGGGGTGA GCAAGGAGCA GTTCCGTGAC ATCGGCCTGC ATGCGGCCTT CAAATCCGTA
TTCCCGATCA TCAGCTACTC CGGCAACGCC GCCCTGGAGT ACGTCGGCTA TCGCCTGGGC
GAGCCGGCGT TCGACGTCAA GGAGTGCGTC CTGCGTGGCG TGACCTTCGC CGTGCCGCTG
CGCGTGAAAG TACGTCTGAT CATTTTCGAC AAAGAATCGT CGAACAAAGC GATCAAGGAC
ATCAAAGAGC AGGAAGTGTA CATGGGCGAA ATTCCGCTCA TGACCGAGAA CGGTACCTTC
GTCATCAACG GTACCGAGCG CGTGATCGTT TCCCAGCTGC ACCGCTCGCC GGGCGTGTTC
TTCGACCACG ACCGTGGCAA GACCCACAGC TCGGGCAAGC TGCTGTACTC CGCTCGCATC
ATCCCCTACC GCGGTTCCTG GCTGGACTTC GAGTTCGATC CGAAGGACGC GGTATTCGTG
CGTATCGACC GTCGCCGCAA ACTGCCGGCG TCCGTCCTGC TGCGCGCGCT CGGCTACAGC
ACCGAAGAGG TGCTGGATGC CTTCTACGAC ACCAACGTGT TCCACGTTAA GAACGAGAGC
CTGAGCCTGG AGCTGGTGCC TCAGCGTCTG CGTGGTGAAG TCGCGGTCCT GGACATCAAG
GACGCCAGCG GCAAGGTGAT CGTGGAGCAG GGCCGTCGTA TCACGGCTCG CCACATCAAC
CAGCTGGACA AGGCTGGCAT CAAGGAGCTG GAAGTTCCGC TCGATTACGT CATTGGCCGT
ACCACTGCCA AGGCCATCGT GCATCCGGCT ACCGGCGAGA TCATCGCCGA GTGCAACACC
GAGCTGACCG CCGACCTGCT GGCCAAGATG GCCAAGGCCA ACGTGGTTCG CTTCGAGACC
CTGTACACCA ACGACATCGA TTGCGGTCCG TTCATCTCCG ATACCCTGAA GATCGACAGC
ACCACCAATC AGCTGGAAGC GCTGGTCGAG ATCTACCGCA TGATGCGTCC CGGCGAGCCG
CCAACCAAGG ACGCTGCCGA GACCCTGTTC AACAACCTGT TCTTCAGCGC CGAGCGTTAC
GACCTGTCCG CCGTGGGCCG CATGAAGTTC AACCGTCGTA TCGGTCGCAC CGAGATCGAA
GGTTCGGGCG TGCTGAGCAA GGAAGACATC GTTGCCGTAC TCAAGACTCT GGTCGACATC
CGTAACGGCA AGGGCATCGT CGACGACATC GACCACCTGG GTAACCGTCG CGTGCGTTGC
GTCGGCGAGA TGGCCGAGAA CCAGTTCCGC GTTGGTCTGG TGCGCGTCGA GCGTGCGGTC
AAGGAACGTC TGTCGATGGC CGAAAGCGAA GGCCTGATGC CGCAGGACCT GATCAACGCC
AAGCCGGTTG CGGCGGCGGT GAAGGAGTTC TTCGGTTCCA GCCAGCTCTC GCAGTTCATG
GACCAGAACA ACCCGCTCTC CGAGATCACC CACAAGCGCC GCGTCTCCGC ACTCGGCCCG
GGCGGTCTGA CCCGTGAGCG CGCCGGCTTC GAAGTCCGCG ACGTACACCC GACCCACTAC
GGCCGCGTGT GCCCGATCGA AACCCCGGAA GGTCCGAACA TCGGTCTGAT CAACTCGCTG
GCTGCCTACG CCCGCACCAA CCAGTACGGC TTCCTGGAAA GCCCGTATCG CGTGGTCAAG
GAAGGCAAGG TCACCGACGA GATCGTGTTC CTGTCCGCCA TCGAAGAAGC CGATCACGTG
ATCGCCCAGG CGTCCGCCAC CCTGAACGAC AAGGGTGAGC TGGTCGACGA GCTGGTTGCC
GTACGTCACC TGAACGAATT CACCGTGAAG GCGCCGGAAG ACGTCACCCT GATGGACGTA
TCGCCGAAGC AGGTAGTCTC GGTTGCCGCC TCGCTGATTC CGTTCCTCGA GCACGACGAC
GCCAACCGTG CACTCATGGG TTCGAACATG CAGCGTCAGG CTGTACCGAC CCTGCGCGCC
GACAAGCCGC TGGTAGGTAC CGGCATGGAG CGCAACGTCG CCCGTGACTC CGGCGTCTGC
GTAGTGGCCC GCCGTGGCGG GGTGATCGAC TCGGTCGATG CCAGCCGTAT CGTGGTTCGC
GTCAACGATG ACGAAGTCGA GACTGGCGAA GCCGGTGTCG ACATCTACAA CCTGACCAAG
TACACCCGCT CCAACCAGAA CACCTGCATC AACCAGCGTC CGCTGGTGAG CAAAGGTGAT
CAGGTAGCGC GTGGCGACAT CATGGCCGAC GGCCCGTCCA CCGACATGGG TGAACTGGCG
CTGGGTCAGA ACATGCGCGT GGCGTTCATG CCGTGGAACG GCTTCAACTT CGAAGACTCC
ATCTGCCTGT CCGAGCGCGT GGTTCAGGAA GACCGCTTCA CCACCATCCA CATCCAGGAA
CTGACCTGTG TGGCGCGTGA CACCAAGCTC GGCCCAGAGG AAATCTCCTC TGACATCCCG
AACGTGGGTG AAGCGGCTCT GAACAAGCTG GACGAAGCCG GTATCGTCTA TGTCGGTGCC
GAAGTCGGCC CGGGCGACAT CCTGGTCGGT AAGGTCACTC CGAAAGGCGA GACCCAGCTG
ACTCCGGAAG AGAAGCTGCT GCGTGCGATC TTCGGTGAGA AGGCGTCCGA CGTGAAGGAC
ACCTCCCTGC GCGTGCCGAC CGGCACCAAG GGTACCGTCA TCGACGTGCA GGTCTTCACC
CGTGATGGCG TCGAGCGCGA CAGCCGCGCC CTGGCCATCG AGAAGCAGCA GCTGGACGAG
ATCCGCAAGG ACCTGAACGA AGAGTTCCGC ATCGTCGAAG GCGCGACCTT CGAGCGTCTG
CGCTCGGCTC TGGTTGGCGC GATCGCCGAA GGCGGCGCTG GTCTGAAGAA AGGCACCGCG
ATCACCGACG AGTTCCTCGA CGGTCTCGAG CGTGGCCAGT GGTTCAAACT GCGCATGGCC
GACGACGCCC TGAACGAGCA GCTGGAGAAG GCCCAGGCCT ACATCTCCGA CCGCCGTCAG
ATGCTCGACG ACAAGTTCGA AGACAAGAAG CGCAAGCTGC AGCAGGGCGA TGACTTGGCG
CCGGGCGTGC TGAAGATCGT CAAGGTCTAC CTGGCCATCC GCCGTCGCAT CCAGCCGGGT
GACAAGATGG CCGGTCGTCA CGGTAACAAG GGTGTGGTCT CGGTGATCAT GCCGGTCGAA
GACATGCCGC ACGACGCCAA CGGCACGCCG GTGGACATCG TTCTGAACCC GCTGGGCGTA
CCGTCGCGTA TGAACGTCGG TCAGATCCTC GAAACCCACT TGGGCCTCGC GGCCAAGGGC
CTGGGCGAGA AGATCAACCG CATGCTCGAA GAGCAGCGCA AGGTCGCCGA ACTGCGCAAG
TTCCTCGCCG AGATCTACAA CGAGATCGGT GGTCGTCAGG AAAACCTCGA CGAGTTCTCC
GACAACGAGA TCCTCGAGCT GGCGAAGAAC CTCAAGGGCG GTGTACCGAT GGCGACTGCC
GTGTTCGACG GCGCCAAGGA AACCGAGATC AAGGCCATGC TGAAGCTGGC CGATCTGCCG
GAAAGCGGCC AGATGCGCCT GTTCGACGGT CGTACCGGTA ACCAGTTCGA GCGCCCGACC
ACCGTCGGCT ACATGTACAT GCTGAAACTG AACCACCTGG TGGACGACAA GATGCACGCC
CGTTCCACTG GTTCCTACAG CCTGGTTACC CAGCAGCCGC TGGGTGGTAA GGCGCAGTTC
GGTGGTCAGC GCTTCGGGGA GATGGAGGTC TGGGCGCTGG AAGCCTACGG TGCCGCCTAC
ACCCTGCAGG AAATGCTGAC CGTGAAGTCG GACGACGTGA ACGGCCGTAC CAAGATGTAC
AAGAACATCG TGGATGGCGA TCACCGTATG GAGCCGGGCA TGCCCGAGTC CTTCAACGTA
CTGATCAAAG AGATCCGTTC GCTCGGCATC GACATCGATC TGGAAACCGA ATAA
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| Protein sequence | MAYSYTEKKR IRKDFSKLPD VMDVPYLLAI QLDSYREFLQ QGVSKEQFRD IGLHAAFKSV
FPIISYSGNA ALEYVGYRLG EPAFDVKECV LRGVTFAVPL RVKVRLIIFD KESSNKAIKD
IKEQEVYMGE IPLMTENGTF VINGTERVIV SQLHRSPGVF FDHDRGKTHS SGKLLYSARI
IPYRGSWLDF EFDPKDAVFV RIDRRRKLPA SVLLRALGYS TEEVLDAFYD TNVFHVKNES
LSLELVPQRL RGEVAVLDIK DASGKVIVEQ GRRITARHIN QLDKAGIKEL EVPLDYVIGR
TTAKAIVHPA TGEIIAECNT ELTADLLAKM AKANVVRFET LYTNDIDCGP FISDTLKIDS
TTNQLEALVE IYRMMRPGEP PTKDAAETLF NNLFFSAERY DLSAVGRMKF NRRIGRTEIE
GSGVLSKEDI VAVLKTLVDI RNGKGIVDDI DHLGNRRVRC VGEMAENQFR VGLVRVERAV
KERLSMAESE GLMPQDLINA KPVAAAVKEF FGSSQLSQFM DQNNPLSEIT HKRRVSALGP
GGLTRERAGF EVRDVHPTHY GRVCPIETPE GPNIGLINSL AAYARTNQYG FLESPYRVVK
EGKVTDEIVF LSAIEEADHV IAQASATLND KGELVDELVA VRHLNEFTVK APEDVTLMDV
SPKQVVSVAA SLIPFLEHDD ANRALMGSNM QRQAVPTLRA DKPLVGTGME RNVARDSGVC
VVARRGGVID SVDASRIVVR VNDDEVETGE AGVDIYNLTK YTRSNQNTCI NQRPLVSKGD
QVARGDIMAD GPSTDMGELA LGQNMRVAFM PWNGFNFEDS ICLSERVVQE DRFTTIHIQE
LTCVARDTKL GPEEISSDIP NVGEAALNKL DEAGIVYVGA EVGPGDILVG KVTPKGETQL
TPEEKLLRAI FGEKASDVKD TSLRVPTGTK GTVIDVQVFT RDGVERDSRA LAIEKQQLDE
IRKDLNEEFR IVEGATFERL RSALVGAIAE GGAGLKKGTA ITDEFLDGLE RGQWFKLRMA
DDALNEQLEK AQAYISDRRQ MLDDKFEDKK RKLQQGDDLA PGVLKIVKVY LAIRRRIQPG
DKMAGRHGNK GVVSVIMPVE DMPHDANGTP VDIVLNPLGV PSRMNVGQIL ETHLGLAAKG
LGEKINRMLE EQRKVAELRK FLAEIYNEIG GRQENLDEFS DNEILELAKN LKGGVPMATA
VFDGAKETEI KAMLKLADLP ESGQMRLFDG RTGNQFERPT TVGYMYMLKL NHLVDDKMHA
RSTGSYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYGAAY TLQEMLTVKS DDVNGRTKMY
KNIVDGDHRM EPGMPESFNV LIKEIRSLGI DIDLETE
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