Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3844 |
Symbol | |
ID | 5106074 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 4234350 |
End bp | 4236245 |
Gene Length | 1896 bp |
Protein Length | 631 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640505098 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | YP_001189323 |
Protein GI | 146308858 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGACCA CTTTCCACGA GATCCCCCGC GAGCGCCCGT TGACGCCGCT GCTCGACAGC GCCAACACGC CCGACGAACT GCGCCGCCTG GCCGAAGCGG ACCTGGAAAC CCTCGCCGAC GAACTGCGCC AGTACCTGCT CTACAGCGTC GGCCAGAGCG GCGGGCACTT CGGTGCCGGC CTCGGCGTCA TCGAGCTGAC CATCGCCCTG CACTACGTCT TCGACACCCC CGATGACCGC CTGGTGTGGG ACGTCGGCCA CCAGGCCTAC CCGCACAAGA TCCTCACCGG CCGTCGCGAG CGCATGGGCA GCCTGCGCCA GAAGGACGGC CTGGCCGCCT TCCCGCGCCG CAGCGAGAGC GAATACGACA CCTTCGGCGT CGGTCACTCC AGCACCAGCA TCAGCGCCGC CCTGGGCATG GCCATCGCCG CCCGCCTGAA AGGCGAGAAG CGCAAGAGCG TGGCGGTGAT CGGCGACGGC GCCCTGACCG CCGGCATGGC CTTCGAGGCG CTCAACCACG CCACCGATGT TGGCGCCAAC ATGCTGGTGA TCCTCAACGA CAACGACATG TCGATCTCCA AGAATGTCGG CGGCCTGTCC AACTACCTGG CCAAGATCAT CTCCAGCCGC ACCTACGCCA GCATGCGCGA GGGCAGCAAG AAGATCCTTT CGCGCCTGCC CGGCGCCTGG GAGATCGCGC GCAAGGTCGA GGAACATGCC AAGGGCATGC TGGTACCCGG CACCCTGTTC GAGGAGCTGG GCTGGAACTA CGTCGGCCCC ATCGACGGCC ACGACCTGCC CACCCTGCTC GCCACCCTGC GCAATATGCG CGACCTCGAC GGCCCGCAGT TCCTCCATGT GGTGACCAAG AAGGGCAAGG GCTTCGCCCC GGCCGAGGCC GACCCGATCG GCTATCACGC CATCACCAAG CTCGAGCCGG TCACCCCCAG CGCGGTGCCC AGGAAACCGA GCGGCCCGAA ATACTCCAAC GTGTTCGGTC AGTGGCTGTG CGACATGGCC GCGGCAGATC AGCGCCTGGT CGGCATCACC CCGGCGATGA AGGAAGGCTC GGATCTGGTG GCCTTCGCCG AGCGCTTCCC CGAGCGCTAC TTCGACGTCG CCATCGCCGA GCAGCACGCC GTGACCCTGG CCGCCGGCAT GGCCTGCGAC GGCGTCAAGC CGGTGGTGGC GATCTATTCC ACCTTCCTCC AGCGCGCCTA TGACCAGCTG ATCCACGACG TCGCGGTGCA GAATCTCGAT GTGCTGTTCG CCATCGACCG CGCCGGTCTG GTCGGCGAAG ACGGCCCGAC CCATGCCGGC AGCTTCGATA TCTCCTACCT GCGCTGCATC CCCGGCATGC TGGTGATGAC CCCCAGCGAC GAGAACGAAC TGCGCCGCAT GCTCACCACC GGCTACCTGT TCGATGGCCC GGCCGCGGTG CGCTACCCGC GCGGCAGCGG CCCCAATGCG CCGCTCGACG CCGGGCTGGA GCTGCTAGAG ATCGGCAAGG CCATAGTGCG ACGCCAGGGC AAGGGCGCAG CCCTGCTGGT ATTCGGCGTG CAACTGGCCG AAGCGCTGCA GGTCGGCGAA GCGCTGAACG CCACCGTGGT CGACATGCGC TTCGTCAAAC CATTGGACGA GGCCCTGCTG CGCGAGCTGG CCGGCAGCCA CGAGCTGCTG GTGACCATCG AAGAGAACGC CGTCATGGGC GGGGCCGGCA GCGCGGTCAG CGAGTTCCTC GCCGCGCAGA ACATCATCAA GCCGCTGCTG CATCTGGGCC TGCCCGATTA CTACGTCGAG CACGCCAAGC CGGCGCAGAT GCTCGCAGAA TGCGGCCTTG ATCAGGCCGG CATCGAACGC GCGGTGCGCG AACGCCTCGA CCAGCTGCGG GCCTGA
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Protein sequence | MPTTFHEIPR ERPLTPLLDS ANTPDELRRL AEADLETLAD ELRQYLLYSV GQSGGHFGAG LGVIELTIAL HYVFDTPDDR LVWDVGHQAY PHKILTGRRE RMGSLRQKDG LAAFPRRSES EYDTFGVGHS STSISAALGM AIAARLKGEK RKSVAVIGDG ALTAGMAFEA LNHATDVGAN MLVILNDNDM SISKNVGGLS NYLAKIISSR TYASMREGSK KILSRLPGAW EIARKVEEHA KGMLVPGTLF EELGWNYVGP IDGHDLPTLL ATLRNMRDLD GPQFLHVVTK KGKGFAPAEA DPIGYHAITK LEPVTPSAVP RKPSGPKYSN VFGQWLCDMA AADQRLVGIT PAMKEGSDLV AFAERFPERY FDVAIAEQHA VTLAAGMACD GVKPVVAIYS TFLQRAYDQL IHDVAVQNLD VLFAIDRAGL VGEDGPTHAG SFDISYLRCI PGMLVMTPSD ENELRRMLTT GYLFDGPAAV RYPRGSGPNA PLDAGLELLE IGKAIVRRQG KGAALLVFGV QLAEALQVGE ALNATVVDMR FVKPLDEALL RELAGSHELL VTIEENAVMG GAGSAVSEFL AAQNIIKPLL HLGLPDYYVE HAKPAQMLAE CGLDQAGIER AVRERLDQLR A
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