Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3819 |
Symbol | |
ID | 5106050 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 4207640 |
End bp | 4209412 |
Gene Length | 1773 bp |
Protein Length | 590 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640505074 |
Product | acyl-CoA dehydrogenase domain-containing protein |
Protein accession | YP_001189299 |
Protein GI | 146308834 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 61 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGAAT TCAACGCCCC GCTGCGCGAT ATGCGCTTCG TCCTCCATGA CGTCTTCCAG GCGCCGAGCC TGTGGGCACG TCTGCCGGCC CTGGCCGAGA CCGTCGATGC CGACACCGCC GATGCCATCC TCGAAGAGGC GGCCAAGGTC ACCGGCAGCC TGATCGCTCC GCTGAATCGC AGCGGCGACG AGGAAGGCGC GCAGTGGGTC GATGGCGACG TGCGCACCCC GGCAGGTTTT CGCGAGGCCT ACGCCACCTA CACCGAAGGC GGCTGGGTCG GCCTGTCCGG CAACCCGAAT TACGGCGGCA TGGGCATGCC CAAGATGCTC GCCGTAGCCT TCGAGGAAAT GCTCTACGCC GCCGGCTCCA GCTTCGCGCT GTACTCGGCG CTGAGCTCCG GCGCCTGCCT GGCCATCGAC GCCCACGCCA GCGAAGACCT TAAAACCACC TACCTGCCAC CAATGTACGA AGGCCGCTGG GCCGGCTCCA TGTGCCTGAC CGAGGCCCAT GCCGGCACCG ATCTGGGCAT CATCCGCACC CGCGCCGAGC CGCAGGCCGA CGGCAGCTAC AAGGTCACCG GCAGCAAGAT CTTTATCACC GGCGGTGAGC AGGACCTGAC CGAGAACATC ATCCATCTGG TGCTGGCCAA GTTGCCGGAC GCACCGGCCG GGCCGAAGGG CATCTCGCTG TTTCTGGTGC CCAAGGTGAT GGTCAATGAC GACGGCAGCC TCGGCGCGCG CAACGCCGTG AGCTGCGGCT CCATCGAGCA CAAGATGGGC ATCAAGGCCT CGGCCACCTG CGTGATGAAC TTCGACGGCG CCACCGGCTA CCTGATCGGC GAGGTCAACA AGGGCCTGGC GGCGATGTTC ACCATGATGA ACTACGAGCG CCTGTCCATC GGCATCCAGG GCATCGGCTG CGCCGAGGCC TCCTACCAGT CGGCCGTCAG CTACGCCCGC GAGCGTATCC AGAGCCGCGC CGCCACTGGC CCGGTCAACC ACGACAAGGT CGCCGACCCG ATCATCGTGC ACGCTGACGT GCGTCGCATG CTGCTGACCA TGAAGGCGCT GAACGAAGGT GGTCGCGCCT TTGCCTGCTA CGTCGGTCAG CAGCTCGACC TGGCCAAGTA CGCCGAGGAC GCCAGCGAAC GGCAGAATGC CGAAGCCCTG GTGGCCCTGC TGACACCAGT GGCCAAGGCC TTCTTCACCG ATACCGGGCT GGAAAGCTGC GTGCACGGCC AGCAGGTGTT CGGCGGCCAC GGCTATATCC GCGAGTGGGG CCAGGAGCAG CTGGTGCGCG ACGTGCGCAT CGCGCAGATC TACGAAGGCA CCAACGGCAT CCAGGCGCTC GACCTGCTGG GCCGCAAGGT GGTGGCCAAC GGCGGCGCCG CGCTGCGCCT GTTCGCCGGC GAGGTGCGCG ACTTCGCCCA TGCCCATGAA TCGCCTTACC GCGAGCGCCT GATCGAGGCC CTGGAGCGCC TGGAGGCGGT CAGCGGCTGG CTGCTGGAGC AGGCCAAGAG CGACCCCAAC TCGGTGGGCG CCGCCTCGGT GGAGTACCTG CACCTGTTCG GCTACGTCGC CTACGCCTAC ATGTGGGCGC GCATGGCGGC GGTGGCGCAG GGCAAGCAGG GCGAAGACGA GGCCTTCTAT GGCGGCAAGC TGGCCACCGC CGAGTTCTTC TTCGCCCGCC TGCTGCCGCG CACCCTGAGC CTGGAGGCGA GCATTCGTGC CGGCAGCCAG CCGCTCTATG GTCTGGCTGC CGAGCAATTT TGA
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Protein sequence | MPEFNAPLRD MRFVLHDVFQ APSLWARLPA LAETVDADTA DAILEEAAKV TGSLIAPLNR SGDEEGAQWV DGDVRTPAGF REAYATYTEG GWVGLSGNPN YGGMGMPKML AVAFEEMLYA AGSSFALYSA LSSGACLAID AHASEDLKTT YLPPMYEGRW AGSMCLTEAH AGTDLGIIRT RAEPQADGSY KVTGSKIFIT GGEQDLTENI IHLVLAKLPD APAGPKGISL FLVPKVMVND DGSLGARNAV SCGSIEHKMG IKASATCVMN FDGATGYLIG EVNKGLAAMF TMMNYERLSI GIQGIGCAEA SYQSAVSYAR ERIQSRAATG PVNHDKVADP IIVHADVRRM LLTMKALNEG GRAFACYVGQ QLDLAKYAED ASERQNAEAL VALLTPVAKA FFTDTGLESC VHGQQVFGGH GYIREWGQEQ LVRDVRIAQI YEGTNGIQAL DLLGRKVVAN GGAALRLFAG EVRDFAHAHE SPYRERLIEA LERLEAVSGW LLEQAKSDPN SVGAASVEYL HLFGYVAYAY MWARMAAVAQ GKQGEDEAFY GGKLATAEFF FARLLPRTLS LEASIRAGSQ PLYGLAAEQF
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