Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3816 |
Symbol | |
ID | 5106047 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4202425 |
End bp | 4204335 |
Gene Length | 1911 bp |
Protein Length | 636 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640505071 |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_001189296 |
Protein GI | 146308831 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGACTG ACGCTCATCT CTCCGCCGTT CCCCTGCAGT CCTGGCTGCG CATCCAGCGC GAGGCGCCGC CGCTGGGCGA GCGGGCCGAG GCCCTACGCC AGGCTCTGCT GGGTTGCCCG CAGGTGCGCC AGGCCTGGTA CCTGGCCTGG CAGCCGGCCA GTCGCACCTA CGCTCAGGTG GACGGAGGAC CGCGCCTGCC GCCGGGCATG GGCGACCCGC TGGAGGCCAG TGACGAGACG CTGTTCGCCG CGCTTGGCGA ACAATCGAGC CTGCCCTTCG ACGCCCTGCG CCGGCTGCCC TGCTGGCTGG CCGGGCGTCT GCGCCGCGCC GCGCTGCATC ATGGCCAGGC GCTGGCCCTG CAGCTGCAGC CCGGCCAGCC CGGCGTGCTG CTATTGCAGG TCGACGAGGC GGCCGGGCTG GAATGGCTGC CCTGGCTGCG TGAACTGCTG GTGCAGATGG TCGAACTGGC CTCGGGGCTG GCGCGCAGTG CTCCGTTGCT GTCGGCCGAC CCGCAGCCGG CGCTGCTGCT CGACGCCGAG GCGCGCCTGC TGGAAAGCAA TGCGGCGCTG CAGGCGCTGC TCGGCGAGCG CGCGCTGGCT CAGGTTGGCG AGCTGTTGCC GGTCAACCAT CTGCCGCTGG TGCGCGCCTG CCTGGAGCAA TGCAGGGCCA TCGAGGCGGT GGAGGCGCAG GACGGCGAGC GAATCCTGAT CTGGAGTTTC GTCCCCGATG TCGCCGAGCG CCGCGTGCTG GCGCGCTGCC GCGAGGCCAC CCGCGAGGTC CGCGAACAGC GCGAGGCCGC GCGGGCGCGG CGGCTGTACC GGCTGATCAC CGAGAACACC ACCGACCTGA TTTCCCGGCA TACGCCGGGC GGCGTGTTTC TCGACGCCTC GCCGGCCTGC TGGACGCTGC TCGGCTACTG GCCGGAAGAA CTGCGTGGCA TGGCGGTCGA CGGCCTGCTG CATCCACAGG ACCAATTGCA GCAGGCCAAG CAGGCGCGCG AGGCGCTGGA GCAGGACGGT TATCACACCA TGACCTACCG CATCCGCCAC CGCGACGGCC ACTACCTGTG GTTCGAGACC GCCAGCCGCG CCATTCGCGA GACCTACACC GGCGCGGTGG TGGAGGTGGT CAGCGTGTCG CGCGACATCA CCGCGCGCAT CCAGGCCGAG GAGAACAAGC GCCGCCTGGA GGACGAGCTG GCGCACACCA CGCGGCTGAT CACCCTGGGC GAGCTGGCCT CGGGCATCGC CCACGAGATC AACCAGCCGC TGGCGGCGGT GGTCAACTAC GCCAGCGCCA GCCAGCGCTA CCTGCAGGGT ATCGGCGGCG ATCCGGCCGG TGTCGACAAG GTGGCCCAGG GCCTGGCGCG CATCACCGAA CACGCCAACC ACGCCGCGGT GGTGATCAGG CGTTTGCGCG CCTTCCTGCG CAAGGGCCAG CGGCGCATGC AGGCGCTGAA CCTGGCTGAG GTGGCGCATG AGGCGGTGCG TCTGTGCAAC TGGGAGGCCG GTGCGGCTCA GGTGGCGGTC AGCGACGTCT TGCCGGACAA TCTGCCACCG GTATTCGCCG ACCGCGTCCT GCTCGAGCAG GTGCTGCTCA ACCTGCTGCG CAATGCCATC GATGCCAACC GCGAGCGCCA CCCGGGCGCG CCTTCGCAGG TGCGACTGGA GGCCGGCGAG TGCGACGGCG GCCTGGCGAT CCGGGTGATC GATCAGGGGC CGGGCGTCAG CGACGAGCAG ATGGCCAAGC TGTTCACCCC CTTCTACACC AGCAAGGCGG ACGGCCTGGG GCTCGGCCTG TCCATGAGCC GCAGCATCGT CGAAGGCTTT GGCGGGGCGC TGGAAGCCTT TCCGGCCGAG GGCGGCGGGC TGTGCCTGGA ATGCCGCTTG CCGCTGGGCA GGGACGAGTA G
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Protein sequence | MKTDAHLSAV PLQSWLRIQR EAPPLGERAE ALRQALLGCP QVRQAWYLAW QPASRTYAQV DGGPRLPPGM GDPLEASDET LFAALGEQSS LPFDALRRLP CWLAGRLRRA ALHHGQALAL QLQPGQPGVL LLQVDEAAGL EWLPWLRELL VQMVELASGL ARSAPLLSAD PQPALLLDAE ARLLESNAAL QALLGERALA QVGELLPVNH LPLVRACLEQ CRAIEAVEAQ DGERILIWSF VPDVAERRVL ARCREATREV REQREAARAR RLYRLITENT TDLISRHTPG GVFLDASPAC WTLLGYWPEE LRGMAVDGLL HPQDQLQQAK QAREALEQDG YHTMTYRIRH RDGHYLWFET ASRAIRETYT GAVVEVVSVS RDITARIQAE ENKRRLEDEL AHTTRLITLG ELASGIAHEI NQPLAAVVNY ASASQRYLQG IGGDPAGVDK VAQGLARITE HANHAAVVIR RLRAFLRKGQ RRMQALNLAE VAHEAVRLCN WEAGAAQVAV SDVLPDNLPP VFADRVLLEQ VLLNLLRNAI DANRERHPGA PSQVRLEAGE CDGGLAIRVI DQGPGVSDEQ MAKLFTPFYT SKADGLGLGL SMSRSIVEGF GGALEAFPAE GGGLCLECRL PLGRDE
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