Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3763 |
Symbol | |
ID | 5105758 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4146404 |
End bp | 4149061 |
Gene Length | 2658 bp |
Protein Length | 885 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640505018 |
Product | CRISPR-associated helicase Cas3 family protein protein |
Protein accession | YP_001189243 |
Protein GI | 146308778 |
COG category | [R] General function prediction only |
COG ID | [COG1203] Predicted helicases |
TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.0421659 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGGAT TCGTCGATTT AAGCGACCGC GCCCGCCGGC TCTGGGCCAA GAGTGGTGAT GGCTTCGGTC ACGGTGTGTT GGCCCATTTG CTGGATGTAG CCGCGGTTGC CGAGCGGATG CTGGCCCACG AGCCTGCAAG TACGTTGGAT TGGGCGGCCC AGGCGCTGGG GCTGGAACGC GAGCATGTGG CGCGTTGGGT CGCCTGCCTA GTGGGGCTGC ATGACTTTGG CAAGGCTATC CCCGGCTTTC AGGACAAGTG GCTTGAGGGA CGGCAAACCG ACGAGACACT GGGGCTGGCC TTTCCCGCTC GCTCGCTGGG CGTTACCGAT CACGCCTGCG CGAGTGCGGC GCTGCTCTGG GAGCATCTGC CGCGTCGGGG TGTGCGGCAT ATGCTGTGGA TTCGCCACGC CTTGCAGGCC ATCAGCGCCC ATCATGGTTA CAACTTCAAT CAGACGGAAC TCAACCGGGG CAAGCCATCG TTCGAGCCAC CGGCCTGGAA CGAGGCGCGC GGGGAACTTT TCGAGGCCTA CTGGGGCGTG CTGGCGCCAC CGGGGGCGCC GCAGCTTGAG GAGCTGGCGC AGCCAGCGGT GCAGTGGCTG GCCGGACTGA CCAGCGTGGC CGATTGGATC GGCTCAAACC CCGAGTGGTT TCCATTGGGC GAGCGCCATG CGCTGCTCGC CGAACACCAT GCCGACGCCT GCTCGCGCGC TGATCAGGCC TTGCAGCAGA TAGGTTGGCG GCCCTTTCAG TCGCTGCTGA CTGCGCCGTC CACGACGGAT CGCCTGATCG GGCAGATCGT CCAGCGTCCG GAGCTGACGG CGCGCCCCCT GCAATCCGAG GCTGACCGCC TACTCGAAGG GGTGCGAGGC CCGGCGCTGC TGCTGGTCGA GGCGCCAATG GGCGAGGGCA AGACCGAACT GGCCTTCCTC GCCCATCTGC GTCTGCAAGC GGCCAACCAG CATCGTGGCC TCTATGTGGC GCTGCCAACC CAGGCCACGG GCAATGCGCT GTTCAGTCGC GCGCTGACCT TTCTCCACGG CTTCGCCGCC GACACCGCGC TGGATGTGCA ACTGGTGCAT GGCGGTGCTG CGCTCAACGA GCAGGTGCTG AAGCTGCGTG GCATTTATGG CGCATCCGGC GACAGCGTGG CCTCGTCTGC CTGGTTCTCT CAGCGCCGCC GTCCGTTGCT GTCGCCCTAT GGCGTCGGCA CCGTGGATCA GGCGCTGTTC GCCACACTCA ACGTCAAACA CCACTTTGTG CGCCTGTGGG GGTTGAGCAA CCGGGTGGTG GTGCTCGATG AAGTGCATGC CTACGACACT TACACCAGCG GACTGATCGA AGCACTGCTG CGCTGGCTCA AGGCGCTGGG CAGTTCGGTG GTGCTGATGA GCGCCACCTT GCCGGTACCG CGCCGCGATG CGTTGCTGCG CGCCTGGGGC GTGGAGGTGG ACGAGGTACC CGAGCTGGCC TATCCGCGCC TGCTGCTGGC CGACGAGCGC GGGTTGCAGG GCGCTACTTG CGACTCACGG CCGTTGTCGC CGATCCAGCT ACAGGCCGTG GCGGAGGATC TCGACAGCCT CACCGCCAAG GCCCAGCTTC TCGTTCAGCA GGGCGGCTGT GGGGCGCTGA TCGTCAATAC CGTGGATCGT GCGCAGAACG TTTACCTCAA GCTCAAGGCC GAGTTGGGCG ATGCGATGCC TCTGCTGCTG TTTCATGCGC GCTTCCCGGC AGATCAGCGC AGCGAGCAGG AGCGGGCGGT ACTGGCGCGC TTCGGTCAGG GCGGAGAGCG ACCTGCCAAG GCATTGCTGA TCGCCACTCA GGTGGCCGAG CAGAGCCTGG ATATCGACTT CGATTTCATG CTCACCGACC TGGCACCGGT GGACTTGATC CTGCAGCGTG CCGGCCGTTT GCACCGCCAT CAGCGCGAGC GCCCCGAAGC GCATCGGCAG GCGATCTTGT ATGTAGCAGG TCTCGACCCC GCTGCATTGC CCGACCTCAA GAGCACCGCC TGGGAATACG TCTACGAGCC CTACATCCTC GGCCGCACCT GGGCGTTGCT ATCGCGCGAA CAGGAACTGC ATCTGCCGCA CGATATTGAC CGGCTGGTGC AGGCGGTTTA CGACGGCGAG AATCTGCCGG CCGATCTCGC CGAGACTGAT CGAGCCTTTA TCGAAGATCA TGCCTATGGC GCTTACCTGG GTAAGCGGCA GACCGAACGG ATGATGGCGC TCAACGTCGC CGTCGATCCG CAGGCCGAGC CGCAGAACGC CTACACCCAG AAGAATCGGG GCTATGAGGA GGGGGAGGAA GGCCTGGGCC TACCCAACTA CACCCGTCTG GGCGATGACT CCGTGACCCT GATTCCCGTG CATCAGGTGC CCGGTGGCTG GAGCCTGACG CCGGGCGGTG ACGCCTTCGA CCCCGATCAG CTACTGTCCA ATGCCCTTGC CAAGCAACTC CACGTCCGGC AGCTGAAGAC GTCGCGCCCA GCGCTGGTCA AGCATGCGCT GGGCGAAGAT TCACCCCGCG CATTCAGCGA GCATCCGCTG CTGCGTCATC TCAAACCGCT GCTGCTTACC GATGGCTACC TACAGATAGG TCGTTTGACG GTGCGTCTGG ATGATGAGTT GGGGCTGGTC TACCAGCGCG ACGCTTAG
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Protein sequence | MKGFVDLSDR ARRLWAKSGD GFGHGVLAHL LDVAAVAERM LAHEPASTLD WAAQALGLER EHVARWVACL VGLHDFGKAI PGFQDKWLEG RQTDETLGLA FPARSLGVTD HACASAALLW EHLPRRGVRH MLWIRHALQA ISAHHGYNFN QTELNRGKPS FEPPAWNEAR GELFEAYWGV LAPPGAPQLE ELAQPAVQWL AGLTSVADWI GSNPEWFPLG ERHALLAEHH ADACSRADQA LQQIGWRPFQ SLLTAPSTTD RLIGQIVQRP ELTARPLQSE ADRLLEGVRG PALLLVEAPM GEGKTELAFL AHLRLQAANQ HRGLYVALPT QATGNALFSR ALTFLHGFAA DTALDVQLVH GGAALNEQVL KLRGIYGASG DSVASSAWFS QRRRPLLSPY GVGTVDQALF ATLNVKHHFV RLWGLSNRVV VLDEVHAYDT YTSGLIEALL RWLKALGSSV VLMSATLPVP RRDALLRAWG VEVDEVPELA YPRLLLADER GLQGATCDSR PLSPIQLQAV AEDLDSLTAK AQLLVQQGGC GALIVNTVDR AQNVYLKLKA ELGDAMPLLL FHARFPADQR SEQERAVLAR FGQGGERPAK ALLIATQVAE QSLDIDFDFM LTDLAPVDLI LQRAGRLHRH QRERPEAHRQ AILYVAGLDP AALPDLKSTA WEYVYEPYIL GRTWALLSRE QELHLPHDID RLVQAVYDGE NLPADLAETD RAFIEDHAYG AYLGKRQTER MMALNVAVDP QAEPQNAYTQ KNRGYEEGEE GLGLPNYTRL GDDSVTLIPV HQVPGGWSLT PGGDAFDPDQ LLSNALAKQL HVRQLKTSRP ALVKHALGED SPRAFSEHPL LRHLKPLLLT DGYLQIGRLT VRLDDELGLV YQRDA
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