Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3722 |
Symbol | |
ID | 5105717 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 4108088 |
End bp | 4109008 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640504977 |
Product | histone deacetylase superfamily protein |
Protein accession | YP_001189202 |
Protein GI | 146308737 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 44 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCTAC CGCTGGTCTA CCACGAGGAT TACAGCCCGC CCTTCCCGGC CGGGCATCGC TTCCCCATGG AGAAATTCCG CCTGCTGCGC GATCACCTGG TCGATAGCGG CCTGACCAGC GATGCCGAAC TGCAACGCCC GGAGCTGTGC CCGGCGGAGA TTCTCGCCCT GGTTCACTGC CCGGACTACA TCGCACGCTA CATGGCCGGC GAGCTATCAT ACGAGGACCA GCGCCGCCTC GGCCTGCCCT GGAGCGAGGC GCTGGCGCGG CGCACGGTGC GCGCCGTGGG CGGCTCGCTG CTGACTGCCG AACTGGCCCT GCGCCACGGT CTGGCCTGCC ACCTGGCCGG CGGCACGCAC CATGCGCACT ACGATTTTCC TTCCGGCTTC TGCATCTTCA ACGACCTGGC GGTGATCGCA CGCTACCTGC TGGAAGCCGG CCGCGTGCAT CGCGTGCTGA TCTTCGACTG CGACGTGCAC CAGGGCGACG GCACCGCGCG ACTGCTGGAA GACGAGCCGG ATGCGATCAC CGTGTCGCTG CACTGCGAGC AGAACTTCCC GGCGCGCAAG GCCGAAAGCG ACTGGGACAT TCCCCTGCCA CGCGGCATGG GCGACGCCGA TTACCTGAAG GTGGTGGATG ACACGCTGAA CTACCTGCTG CCGATCTACC AGCCGGACCT AGTGCTCTAC GACGCCGGCG TCGACGTGCA CAAGGACGAC GCCCTGGGCT ACCTGCAACT CACCGACGCC GGCCTGGCCG CCCGCGACGA AGCCGTGCTG CATCACTGCC TGGGCCGCGA CATACCGGTG TTGGGGGTGA TCGGCGGCGG CTACTCGAAG GATCACGCCG CCCTCGCCCG CCGCCACGGC ATCCTGCACC ACAGCGCCGC AAAGGTGTGG GCGGCGCGAG GGCTGCGCTG A
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Protein sequence | MPLPLVYHED YSPPFPAGHR FPMEKFRLLR DHLVDSGLTS DAELQRPELC PAEILALVHC PDYIARYMAG ELSYEDQRRL GLPWSEALAR RTVRAVGGSL LTAELALRHG LACHLAGGTH HAHYDFPSGF CIFNDLAVIA RYLLEAGRVH RVLIFDCDVH QGDGTARLLE DEPDAITVSL HCEQNFPARK AESDWDIPLP RGMGDADYLK VVDDTLNYLL PIYQPDLVLY DAGVDVHKDD ALGYLQLTDA GLAARDEAVL HHCLGRDIPV LGVIGGGYSK DHAALARRHG ILHHSAAKVW AARGLR
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