| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3717 |
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| Symbol | |
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| ID | 5105712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4102848 |
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| End bp | 4104281 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640504972 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001189197 |
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| Protein GI | 146308732 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGCAGT CCCTGTTGTC CCTGGCCGTG GCCGCCGCTC TGCTCAGCGG CTGCAGCCTG
ATTCCCGACT ATCAGCGCCC GGACGCCCCG GTGGCCGCCG ACTGGCCGCA GGGCGAGGCC
TACGGCAGCG CCGCCAGCGA AGGCAGCCGC GCCGCCGCCG ACCTGCAATG GCGCGAGTTC
TTCCGTGACC CGGCGCTGCA GCAACTGGTG CAGGTAGCGC TGGAGAACAA CCGCGACCTG
CGCGTCGCCG CGCTGAACGT CGAAGCCTAC CGCGCGCTGT ACCGCATCCA GCGCGCCGAC
CTGCTGCCCT CGGTTTCCGC CGATGGCGCC GGCACCCGCC AGCGCCTGCC GGCCGATCTG
AACCAGACCG GCGAAGCCCG CACCAGCGGC CAGTACAGCG CGACCCTGGG CGTCAACGCC
TGGGAGCTGG ACTTCTTCGG GCGCCTGCGC AGCCTCAGCG AGCAGGCCCT GCAGCAGTAC
CTGGCCACCG AACAGGCGCA GCGCAGCACG CAGATCAGCC TGGTGGCCAG CGTCGCCAAC
GCCTACCTGC AGTGGCAGGC CGACCTGGCG CTGCTACAGC TGACCCAGGA CACCCTGAAG
ACCTTCGAGG AAAGCTACCA GCTGACCCAG CGCAGCTTCG ACGTCGGCGT CGCCGATGCC
CTGGCCCTGA GCCAGGCGCG CAGCGCGGTG GACAGCGCAC GCGTCAGCCT GGCGCAGTAT
CAGCGCCTGG TCGCTCAGGA CCGCAACGCC CTGACCCAGT TGCTCGGCAC CGGCCTACCG
GCCGACCTGC CGCAAGGGCT GAAGCTCAAT GCCGAGCTGC TGGAACAGGT TCCAGCCGGC
CTGCCCGCCG ACCTGCTGCA GCGTCGCCCC GACCTGCTGC AGGCCGAGTA CCAGCTCAAG
GCGGCCAACG CCAATATCGG CGCGGCGCGT GCGGCGTTCT TCCCCAGCAT CAGCCTGACC
GCCAATGCCG GCACCGCCAG CAGCCAGCTG TCCGGCCTGT TCGACAGCGG CTCGGGCACC
TGGCTGTTCC AGCCGCAGAT CAGCCTGCCG ATCTTCAACG CCGGGCGTCT GCGCGCCAAC
CTCGACTATG CCGAGCTGCA GAAGGACATC CAGGTGGCCC AGTACGAGAA GGCCATCCAG
ACCGCCTTCC AGGAAGTCGC CGACCGCCTC GCCGCGCGCA CCACCTACCG CCGCCAGCTG
GATGCCCAGC GCGCATTGCT GGACACCACC GAGACCTACT ACGACCTGGC CGAGCGCCGC
TACCGCACCG GTGTGGACAG CTACCTGACC CTGCTCGACG CCCAGCGTCA GCTGTTCAGC
GTACGCCAGC AACTGATCGC CGACCGCCTG GCCCAGCTCA GCAGCGAAGT GGAGCTGTAC
AAGGCCCTGG GTGGTGGCTG GAGCGATACG GGGAGCAACG CCCCACAAGG TTGA
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| Protein sequence | MRQSLLSLAV AAALLSGCSL IPDYQRPDAP VAADWPQGEA YGSAASEGSR AAADLQWREF
FRDPALQQLV QVALENNRDL RVAALNVEAY RALYRIQRAD LLPSVSADGA GTRQRLPADL
NQTGEARTSG QYSATLGVNA WELDFFGRLR SLSEQALQQY LATEQAQRST QISLVASVAN
AYLQWQADLA LLQLTQDTLK TFEESYQLTQ RSFDVGVADA LALSQARSAV DSARVSLAQY
QRLVAQDRNA LTQLLGTGLP ADLPQGLKLN AELLEQVPAG LPADLLQRRP DLLQAEYQLK
AANANIGAAR AAFFPSISLT ANAGTASSQL SGLFDSGSGT WLFQPQISLP IFNAGRLRAN
LDYAELQKDI QVAQYEKAIQ TAFQEVADRL AARTTYRRQL DAQRALLDTT ETYYDLAERR
YRTGVDSYLT LLDAQRQLFS VRQQLIADRL AQLSSEVELY KALGGGWSDT GSNAPQG
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