| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3688 |
|---|
| Symbol | groEL |
|---|
| ID | 5110149 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 4070516 |
|---|
| End bp | 4072162 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640504943 |
|---|
| Product | chaperonin GroEL |
|---|
| Protein accession | YP_001189168 |
|---|
| Protein GI | 146308703 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02348] chaperonin GroL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCTA AAGAAGTCAA GTTTGGCGAT TCCGCCCGCA AGAAAATGCT CGTAGGCGTC
AACGTACTGG CCGACGCCGT CAAAGCCACC CTCGGCCCGA AAGGCCGTAA CGTGGTTCTG
GCCAAATCCT TCGGCGCCCC GACCATCACC AAAGACGGTG TGTCGGTTGC CAAGGAAATC
GAACTGAAAG ACGCCTTCGA AAACATGGGC GCCCAGCTGG TCAAGGACGT CGCGTCCAAG
GCCAACGACG CTGCCGGTGA CGGCACCACC ACCGCGACCG TTCTGGCTCA AGCCATCGTC
AACGAAGGCC TGAAGTCCGT TGCGGCCGGC ATGAACCCGA TGGATCTGAA GCGCGGCATC
GACAAGGCCA CCAGCGCCAT CGTTGCTCAG CTCAAAGACC TGGCCAAGCC GTGCGCCGAC
TCCAAGGCCA TCGCTCAGGT CGGCACCATC TCCGCCAACT CCGACAACTC CATCGGTGAC
ATCATCGCCG AAGCCATGGA CAAGGTCGGC AAAGAAGGCG TGATCACCGT TGAAGAAGGC
TCGGGCCTGG AAAACGAACT GTCCGTCGTA GAAGGCATGC AGTTCGACCG CGGCTACCTG
TCGCCGTACT TCATCAACAA GCCGGACACC ATGGTTGCCG AGCTGGAAGG CCCGCTGCTG
CTGCTGGTCG ACAAGAAGAT CAGCAACATC CGCGAACTGC TGCCGGTTCT GGAAGCCGTT
GCCAAAGCTG GCCGTCCGCT GCTGATCGTG GCTGAAGACG TCGAAGGCGA AGCCCTGGCT
ACCCTGGTCG TGAACAACAT GCGCGGCATT GTCAAGGTCG CCGCCGTCAA GGCGCCGGGC
TTCGGCGACC GCCGTAAGGC CATGCTGCAG GACATCGCCA TCCTCACCGG CGGTACCGTG
ATCTCCGAAG AAGTTGGCCT GTCCCTGGAA AGCGCCACTC TGGAGCACCT GGGTAACGCC
AAGCGCGTCG TGCTGAACAA GGACAACACC ACCATCATCG ATGGTGCTGG TGCCCAGGCC
GACATCGAAG CCCGCGTTGC GCAGATCCGC AAGCAGGTCG AAGAAACCTC TTCCGACTAC
GACAAAGAGA AGCTGCAAGA GCGTCTGGCC AAGCTGGCCG GCGGTGTTGC CGTGATCAAG
GTTGGCGCTG CCACCGAAGT CGAGATGAAA GAGAAGAAGG CCCGCGTTGA AGACGCCCTG
CACGCTACCC GCGCTGCCGT GGAAGAAGGC GTGGTACCTG GCGGTGGCGT GGCTCTGGTG
CGCGCTCTGC AGGCCATCGA AGGCCTGAAG GGCGACAACG AAGACCAGAA CGTCGGTATC
GCTCTGCTGC GTCGCGCTGT CGAAGCGCCG CTGCGTCAGA TCGTTGCCAA CGCCGGCGGC
GAGCCGAGCG TAGTGGTCGA CAAGGTCAAG CAGGGTTCGG GCAACTTCGG CTTCAACGCC
GCGACCGACA CCTACGGCGA CATGATCGAG ATGGGTATTC TCGACCCGGC CAAGGTCACC
CGCTCCGCGC TGCAGGCTGC TGCCTCCATC GGCGGCCTGA TGATCACCAC CGAGGCCATG
GTTGCCGAAG CGGCTGACGA CAAGGCTCCG GCCATGCCTG ACATGGGCGG CATGGGCGGT
ATGGGTGGCA TGGGCGGCAT GATGTAA
|
|---|
| Protein sequence | MAAKEVKFGD SARKKMLVGV NVLADAVKAT LGPKGRNVVL AKSFGAPTIT KDGVSVAKEI
ELKDAFENMG AQLVKDVASK ANDAAGDGTT TATVLAQAIV NEGLKSVAAG MNPMDLKRGI
DKATSAIVAQ LKDLAKPCAD SKAIAQVGTI SANSDNSIGD IIAEAMDKVG KEGVITVEEG
SGLENELSVV EGMQFDRGYL SPYFINKPDT MVAELEGPLL LLVDKKISNI RELLPVLEAV
AKAGRPLLIV AEDVEGEALA TLVVNNMRGI VKVAAVKAPG FGDRRKAMLQ DIAILTGGTV
ISEEVGLSLE SATLEHLGNA KRVVLNKDNT TIIDGAGAQA DIEARVAQIR KQVEETSSDY
DKEKLQERLA KLAGGVAVIK VGAATEVEMK EKKARVEDAL HATRAAVEEG VVPGGGVALV
RALQAIEGLK GDNEDQNVGI ALLRRAVEAP LRQIVANAGG EPSVVVDKVK QGSGNFGFNA
ATDTYGDMIE MGILDPAKVT RSALQAAASI GGLMITTEAM VAEAADDKAP AMPDMGGMGG
MGGMGGMM
|
|---|
| |