| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3669 |
|---|
| Symbol | |
|---|
| ID | 5110130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 4054154 |
|---|
| End bp | 4056304 |
|---|
| Gene Length | 2151 bp |
|---|
| Protein Length | 716 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640504924 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001189149 |
|---|
| Protein GI | 146308684 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.170337 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTCA AGTCGGTCCA GTTTTCCGTC GCCTTTCTTG CCGGTGCCAG CGTGCTGCTG
GTGGTCGTGG CCCTGGTGCT CTATGCCCTG TTCGCCAGCG GTCGCACCCA GACACTGGTC
CAGCAGCGCA CCCAGACGCT GCTCGAGCAG ATCATCGAAC AACGCCTGGC GGCCCTGGCC
CAGGCGCAGG TCAGCGAAAT CCAGCGCGAA CTGGAACAGC CGCTGCAGAT CACCGCCGGT
CTGGCCCGGG TCAACGCCAT GCTCGGCATG ACCGACGCCA GCGGCAGCCC GCTGCTCAGC
ATCAGCCGCG AGGAGCTGGC CAACCTGGTG CGTGAGACCA CGGCGCAGAA TCCCAAACTG
CTCGGCAGCT ACATCGGCTG GGAACCGAAT GCCTTTGATG CCAGTGACGA CCTCTATGCC
GGCAGCAGCG AGAACGGCTA CGACGGTACC GGCCGCTTCC TGCCCTGGTG GTACCGCAAT
GCCGACGGCA GCCTGGGGAT CGACGCCATC GGCTCGATGG AAAGCGAGAC CCTGCTCCCC
ACCGGCGTCC GCGAGGGCGA GTACTACCTG TGCGCCAAGG AGCGCAAACG CCCCTGCGTG
ATCGACCCGG CCCCCTACGA CGTCGGCGGC AAGATGACCA TGCTCGCCTC CTTCACCTCG
CCGATTCTTG TGGACGGCGA GTTTCGCGGC ATCGCCGGTG CCGACCTGGC CGTCAACTTC
ATCCAGGATC TGCTGACCAA GGCTGACGCC CAGCTCTATG GCGGCGCCGG CGAGATGGCG
CTGATCGCCG GCAACGGCCG CCTGGTGGCC TCGACCCAGG CGCCGGACAA GCTTGGCGAA
CCGGCGACGC TGCTGCTCGA TGCCAACGAG CTGGCCAACC TGAGCGGCCT GCAACCCGGC
ACGCCGAAGT ACGACATCCA TGTCGAGGAC GATCCCGCCA AAAGTCATAT CGAGCTGTTT
CTCAGCTTCG CCATCGGCCA GAGCGACGCC CGCTGGGTGC TGATGCTGGT GCTGCCGCTG
GACACCGTGA TGGCCGATCT GCGCCAACTG CAGGCCGAGC TGAGCGCCCA GCGCGACGGC
GACACCCTGG GCATGACCCT GGTCGGCCTG CTGATCGCCG GCCTCGGTCT GCTGGTGATC
TGGTTCGTCG GCTACGGCAT CGCCCGCCCG CTGCGGCAGA TGGTCGGCAT GCTCGATGAC
ATCGCCAAGG GCGACGGCGA TCTGACCGTG CGCCTGCAGG TGGAACGCAA CGACGAGCTG
GGCCGTATCG CCCAGGGCTT CAACGCCTTC CTCGCCAAGT TACAGACCAT GATCGGCGAC
GTGGTGACCT CGGTACAAAA GGTCAGCGAC TCCTCCGAGC ACACCGCCGA TATCGCCATC
CGCACCAACC AGGGCGTGCA GAAGCAGCTG GCGGAAATCG AACTGGTGGC CACTGCCGTG
CACCAGATGA CCGCCACCGC GCAGGACGTG GCGCGCAACG CCACTCAGGC CGCCGAAGCC
GCCCACCATG CCGACCAGGC GGCCAATCAG GGCAAGCAGG TGGTCCAGGA AACCTCGGCC
GCCATCGCCG CCCTGGCCAG CGAGATCGGC CGCGCCGTCG GCGTGGTGCA GAACCTGGCC
AAGGACAGCG AGAACATCAA CGCCATCCTC GTCGCCATTC GTGGCATCGC CGAACAGACC
AATCTGCTGG CACTCAACGC CGCCATCGAA GCCGCACGCG CCGGCGAACA GGGCCGAGGC
TTCGCCGTGG TCGCCGACGA GGTACGCAAC CTGGCGCAGA AGACCCAGCA GGCCACCGAA
GAAATCCAGA GCATGATCCA GCAGCTGCAG CAAGGCACCC GCGAAGTGGT CAAGGTCATG
GAACAGAGCC AGAGCAAGAC CGACGACAGC GTGGAGCATG CCAACCAGGC CGCCCACTCG
CTGGAATCCA TTACCCAGGC GGTCTCGGTG ATCAACGACA TGAACACGCA GATCGCCAGT
GCAGCGGAAG AACAGAGCGC GGTGGCCGAA GACATCAACC GCAACGTCAC CAACATCGGC
CAGGTGGCCA ACGAGGTCGC TGCCGGTGCC GACGAGGCCA GCCAGGCCAG CGCCGAACTG
ACCAAGCTGG CCGAACAGCA GCGCAGGCTG ATCAATCAGT TCAAGGTGTA A
|
|---|
| Protein sequence | MKFKSVQFSV AFLAGASVLL VVVALVLYAL FASGRTQTLV QQRTQTLLEQ IIEQRLAALA
QAQVSEIQRE LEQPLQITAG LARVNAMLGM TDASGSPLLS ISREELANLV RETTAQNPKL
LGSYIGWEPN AFDASDDLYA GSSENGYDGT GRFLPWWYRN ADGSLGIDAI GSMESETLLP
TGVREGEYYL CAKERKRPCV IDPAPYDVGG KMTMLASFTS PILVDGEFRG IAGADLAVNF
IQDLLTKADA QLYGGAGEMA LIAGNGRLVA STQAPDKLGE PATLLLDANE LANLSGLQPG
TPKYDIHVED DPAKSHIELF LSFAIGQSDA RWVLMLVLPL DTVMADLRQL QAELSAQRDG
DTLGMTLVGL LIAGLGLLVI WFVGYGIARP LRQMVGMLDD IAKGDGDLTV RLQVERNDEL
GRIAQGFNAF LAKLQTMIGD VVTSVQKVSD SSEHTADIAI RTNQGVQKQL AEIELVATAV
HQMTATAQDV ARNATQAAEA AHHADQAANQ GKQVVQETSA AIAALASEIG RAVGVVQNLA
KDSENINAIL VAIRGIAEQT NLLALNAAIE AARAGEQGRG FAVVADEVRN LAQKTQQATE
EIQSMIQQLQ QGTREVVKVM EQSQSKTDDS VEHANQAAHS LESITQAVSV INDMNTQIAS
AAEEQSAVAE DINRNVTNIG QVANEVAAGA DEASQASAEL TKLAEQQRRL INQFKV
|
|---|
| |