Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3604 |
Symbol | |
ID | 5106151 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3975788 |
End bp | 3977965 |
Gene Length | 2178 bp |
Protein Length | 725 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640504857 |
Product | polynucleotide phosphorylase/polyadenylase |
Protein accession | YP_001189084 |
Protein GI | 146308619 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0558589 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATCGGG TCCGACTCCC ATGCCGCTTT CAGATTTCCC CCAAAGGCAA CAAAGAGAAG GAAAACACCG TGAACCCGGT AATCAAACAG TTCAAGTTCG GTCAATCGAC CGTAACCCTC GAGACCGGCC GCATCGCCCG TCAGGCCAGC GGTGCCGTGC TGGTGACCGT CGACAACGAC GTCACCGTGC TGGTCACCGT GGTCGGTGCC AAGACCGCCG ACCCGAGCAA GGGCTTCTTC CCGCTGTCCG TGCACTACCA GGAAAAGACC TACGCTGCCG GCAAGATTCC TGGCGGTTTC TTCAAGCGTG AAGGCCGTCC GAGCGAGAAG GAAACCCTGA CCTCGCGCCT GATCGACCGT CCGATCCGCC CGCTGTTCCC CGAAGGTTTC ATGAACGAAG TGCAGGTCGT CTGCACCGTC GTTTCCACCA GCAAGAAGAC CGATCCGGAC ATCGCTTCGA TGATCGGTAC CTCCGCTGCC CTGGCCGTTT CCGGCATCCC GTTCAACGGC CCGATCGGTG CCGCCCGCGT GGCCTTCCAC CCGGACACCG GCTACCTGCT GAACCCGAAC TACGAGCAGC TCAAGGCCTC CAGCCTGGAC ATGGTCGTCG CCGGTACCGA AACCGCCGTG CTGATGGTGG AATCCGAAGC TGACGAGCTG ACCGAAGACC AGATGCTCGG CGCCGTGCTG TTCGCCCACC AGGAATTCCA GGCCGTGATC CAGGCCGTCA AGGAATTCGC TGCCGAAGCT GGCAAGCCGA CCTGGAACTG GCAGGCTCCG GCCGCCAACA CACCGCTGCT GGACGCCATC CGCAGCCAGT TCGGCGAGGC CATCAGCCAG GCCTACACCA TCACCATCAA GCAGGATCGC TACAACCGTC TGGATGAGCT GCGTGAGCAG GTCATCGCTG CCCTGGCCGG CGAAGGCGAA GGCAAGTTCG CTGCCGACGA GGTCAAGGCC GCTTTCGGTG AGATCGAGTA CCGCACCGTG CGCCAGAACA TCGTCGACGG CAAGCCGCGT ATCGACGGTC GCGACACCCG CACCGTACGC CCGCTGAAGA TCGAAGTCGG CGTGCTCGAC AAGACCCACG GCTCGGCGCT GTTCACCCGT GGTGAAACCC AGGCTCTGGT CGTCGCCACC CTCGGCACCG CCCGCGATGC GCAGCTGCTC GACACCCTGG AAGGCGAGAA GAAAGACCCC TTCATGCTGC ACTACAACTT CCCGCCGTTC TCGGTCGGTG AGTGTGGCCG CATGGGTGGC GCCGGTCGCC GCGAAATCGG CCACGGCCGT CTGGCCCGTC GTGGCGTTGC CGCCATGCTG CCGAAGGACG ACGAGTTCCC CTACACCATC CGCGTGGTGT CGGAGATCAC CGAGTCCAAC GGTTCTTCCT CCATGGCTTC GGTCTGCGGT GCCTCCCTGG CCCTGATGGA CGCCGGCGTG CCGATGAAGG CGCCGGTTGC CGGTATCGCC ATGGGTCTGG TGTTGGAGGG CGAGAAATTC GCCGTTCTGA CCGACATCCT CGGTGACGAA GACCACCTGG GCGACATGGA CTTCAAGGTA GCCGGTACCG CCAAGGGCGT CACCGCGCTG CAGATGGACA TCAAGATCCA GGGCATCACC GAAGAGATCA TGGAGCAGGC CCTGGAGCAG GCGCTGGAAG CTCGCCTGAA CATCCTCGGT CAGATGAACC AGGTCATTTC GCAGTCGCGC ACCGAGCTGT CGGCCAACGC GCCGACCATG CTGGCGATGA AGATCGATCA GGACAAGATC CGCGACGTCA TCGGCAAGGG TGGTGCCACC ATCCGCGCGA TCTGCGAAGA GACCAAGGCT TCGATCGACA TCGAAGACGA CGGCTCGATC AAGATCTTCG GCGAAACCAA GGATGCCGCC GAGGCTGCCA AGCAGCGCGT GCTGGCCATC ACCGCCGAAG CCGAGATCGG CAAGATCTAC GTCGGCAAGG TCGAGCGCAT CGTCGACTTC GGCGCCTTCG TCAACATCCT GCCGGGCAAG GACGGTCTGG TGCACATCTC CATGCTGAGC GATCAGCGCG TGGAGAAGGT CACCGACGTC CTGAAGGAAG GTCAGGAAGT GAAGGTACTG GTACTGGACG TGGACAACCG CGGCCGTATC AAGCTGTCGA TCAAGGACGT AGCTGCTGCC GAGGCCTCCG GGGTCTAA
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Protein sequence | MHRVRLPCRF QISPKGNKEK ENTVNPVIKQ FKFGQSTVTL ETGRIARQAS GAVLVTVDND VTVLVTVVGA KTADPSKGFF PLSVHYQEKT YAAGKIPGGF FKREGRPSEK ETLTSRLIDR PIRPLFPEGF MNEVQVVCTV VSTSKKTDPD IASMIGTSAA LAVSGIPFNG PIGAARVAFH PDTGYLLNPN YEQLKASSLD MVVAGTETAV LMVESEADEL TEDQMLGAVL FAHQEFQAVI QAVKEFAAEA GKPTWNWQAP AANTPLLDAI RSQFGEAISQ AYTITIKQDR YNRLDELREQ VIAALAGEGE GKFAADEVKA AFGEIEYRTV RQNIVDGKPR IDGRDTRTVR PLKIEVGVLD KTHGSALFTR GETQALVVAT LGTARDAQLL DTLEGEKKDP FMLHYNFPPF SVGECGRMGG AGRREIGHGR LARRGVAAML PKDDEFPYTI RVVSEITESN GSSSMASVCG ASLALMDAGV PMKAPVAGIA MGLVLEGEKF AVLTDILGDE DHLGDMDFKV AGTAKGVTAL QMDIKIQGIT EEIMEQALEQ ALEARLNILG QMNQVISQSR TELSANAPTM LAMKIDQDKI RDVIGKGGAT IRAICEETKA SIDIEDDGSI KIFGETKDAA EAAKQRVLAI TAEAEIGKIY VGKVERIVDF GAFVNILPGK DGLVHISMLS DQRVEKVTDV LKEGQEVKVL VLDVDNRGRI KLSIKDVAAA EASGV
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