Gene Pmen_3497 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3497 
Symbol 
ID5105965 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3859090 
End bp3860229 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content66% 
IMG OID640504749 
ProductPyrrolo-quinoline quinone 
Protein accessionYP_001188977 
Protein GI146308512 
COG category[S] Function unknown 
COG ID[COG1520] FOG: WD40-like repeat 
TIGRFAM ID[TIGR03300] outer membrane assembly lipoprotein YfgL 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTTGGA AGAATGCCGC ACTGCTGGCT CTGGCCGTTC TGGCCGTGGG TTGCAGCAGC 
AATAGCAAGA AGGAACTGCC GCCCGCCGAG CTGACCAAGT TCGACGCCGA AGTCGAACTG
CGCACCGAGT GGAGCCGCTC CGTTGGTGAC GGTCAGGGCG AAACCTTCAA CATGCTGGTA
CCGGCCATCG ACGGCGAAGT GATCTACGTC GCCGACGTCG AAGGCCTGGT CATGGCCATG
GACCGCACCA CCGGCAAGGT CATCTGGCGC AAGAAGCTGG ACATCCCGGT TTCCGGCGCC
ATCGGTGTCG GCTACGGCCA GGTGCTGCTG GGCACGCTCA AGGGTGAGGT GATCGCCCTG
GACTCCAGCG ATGGCGAAGA GCAGTGGCGC TCGCGCGTGA CCAGCGAAGT GCTGGCGGCG
CCGGCCAGCA ACGGCGATAT CGTCGTGGTG CAGACCCAGG ACGACCGCCT GATCGCCTTC
GACGCCAGCA CCGGCAGCCA GCGCTGGATC GTCGAGAACA CCCCGGCCGT GCTGACCCTG
CGTGGTACCG GCGCGCCGCT GGTGACCAAC CGCCTGGTGG TCGCCGGCCT GTCCAGCGGC
AAGGTGATTG CAGTCGACGC CCAGCGTGGC CTGCCGGTGT GGGAACAGCG CGTTGCCATT
CCGCAAGGTC GTTCCGAGCT GGAGCGCGTG GTGGACATCG ACGGCGGTCT GCTGCTGTCC
GGCGGCACCG TCTACGCGGT GAGCTACCAG GGCCGTGTCG CGGCCATGGA TCTGGAGTCC
GGTCGCGTGC TGTGGCAGCG CGAGGCGTCC AGCTCGGTAG GCGTCGCTCA GGGCTTCGGC
AACGTCTACG TCAGCCATGC CAGCGGCACC GTCGAAGGTA TCGACGAGCG CAGCGCCTCG
GCGCTGTGGA GCAACGATTC GATGGCGCGT CGCCAGCTCT CGGGGCCGGC GGTGTTCTCC
AGTTATGTCG CCGTGGGTGA CTTCGAGGGC TATCTGCACC TGCTGAGCCA GGTTGATGGT
CGCTTCGTCG GCCGTACCCG CATCGACAGC GACGGCCTGC GCGCCCAGCC GCTGGTGGTG
GGTGACTGGC TGTACGTTTA CGGCAACAGC GGCAAGTTGG TGGCTCTGAC CATCAAGTAA
 
Protein sequence
MRWKNAALLA LAVLAVGCSS NSKKELPPAE LTKFDAEVEL RTEWSRSVGD GQGETFNMLV 
PAIDGEVIYV ADVEGLVMAM DRTTGKVIWR KKLDIPVSGA IGVGYGQVLL GTLKGEVIAL
DSSDGEEQWR SRVTSEVLAA PASNGDIVVV QTQDDRLIAF DASTGSQRWI VENTPAVLTL
RGTGAPLVTN RLVVAGLSSG KVIAVDAQRG LPVWEQRVAI PQGRSELERV VDIDGGLLLS
GGTVYAVSYQ GRVAAMDLES GRVLWQREAS SSVGVAQGFG NVYVSHASGT VEGIDERSAS
ALWSNDSMAR RQLSGPAVFS SYVAVGDFEG YLHLLSQVDG RFVGRTRIDS DGLRAQPLVV
GDWLYVYGNS GKLVALTIK