| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3436 |
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| Symbol | |
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| ID | 5107286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3792928 |
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| End bp | 3794508 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640504690 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001188918 |
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| Protein GI | 146308453 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.97143 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGAAC GTCCCAAGAA CCACCTCGAA CGCGTGTTCG CAGGTGTCAA TCCGACCATG
GCGATCGCCT CGATCACCAT GGTCCTCGCC TTCGTGCTGT TCACTGTGAC CAACGCCGAG
CTGGCCAACG GTATCTATAC CGCTACCAAG TCCTGGATCG AGGGCTCACT GGGCTGGTAC
TACGTAGCCG TCGTTAGTTC GGTGCTGTTC TTTACCGTCT GGGTCGGTTT CAGCCGATTT
GGCACTTTGC GCCTGGGCAA GGACGATGAG CGCCCCGAGT TCAGCAACTT CTCCTGGTTC
GCCATGCTGT TCAGCGCCGC AGTTGGCACC GGCCTACTGT TCTGGAGTAT CGCCGAGCCG
CTGATGCACA TGCAGGGCAA CCCCTACATG GACATGGCCG GGGTCGCGGC TGGCAGCGCT
GAGGCCGCGC AGATCGCCCT GCGCATCACC ATGTTCCACT GGGGCCTGCA CGGCTGGTGC
ATCTATATCG TGGTCGGCCT GGTGCTGGCC TATTTCACCT ATCGCCGCGG CCTGCCGCTG
ACCATCCGCT CGGCGCTGTA TCCGCTGCTG GGCGAGCGGA TCCACGGTCC GATCGGCCAT
GCGGTGGACT TGCTGGCGAT CTTCAGCACC CTGTTCGGCA CCGCCACCAC CCTGGGCCTG
GGCGTTTCGC AGATGAACGC CGGGCTGAGC TACATGTTCG GCTGGGAAAT CTCCACTACC
AACCAATTGC TGCTGATTGC CGGCACCTCG GTGGTGGCGA CCTTCTCCGC TGTCTCTGGC
GTGCGCCGCG GCATCCTCTG GCTCAGCGAG TGGAATATCC GCCTGAGCAG CATTCTGTTC
CTGTTCCTGC TGCTGGCCGG GCCGACCGTG TTCCTGCTGG GCTTGTATGC CACCAGCATC
GGCGACTACC TGGCTCACTT CATTCCCATG GGGCTGTGGA CCGACTCCGA TCCGGAGCGC
CAGTGGCAGG GCTGGTGGAC GATCTTCTAC TGGGGCTGGT GGCTGTCCTG GGGCCCGTTC
GTCGGCATGT TCATCGCCCG TATCTCCCGT GGTCGCACCG TGCGCCAGGT GGTGGTGGGC
GGGATGCTGG CTTCCACCCT CGGCGCCTTC CTGTGGATCG TGATCATGGG CGGCACCGGC
GTCTACCTGC AGCTCAATGG TGTCGACCTG GCGAGCGTGG CCAACAGCGA CCTGACCATG
GTGCTTTACA AGACCATCGA AGGTCTGGGC GTGGAGTGGG CCATCCTGCC CATGGCCGGC
CTGGCGACGC TGATGATCGT CAGCTGGTTC GTCACCTCGG CAGACTCGGC GACGCTGGTG
ATCTGCACCA TCCTTTCCCA GGGCGACCAC AACCCGCCGC AGCGCTACCG CATCATCTGG
GGCCTGGGCC TCGGCGCCCT GGCCGGCGTG CTGTTGTTGG CCGGCGGCCT GCAGGGCCTG
CAGGCGGCGA CCATCGCGGC GGCTCTGCCG TTCTCCCTGG TGCTGCTGCT GATCTGCTAC
TGCCTGGTCA AGGCGCTGCA TCAGGAGGAA AGTGCACTGC AGCGCACTGC CGAACCGAGG
GTGGGCGCTC GCGTCTCTTG A
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| Protein sequence | MSERPKNHLE RVFAGVNPTM AIASITMVLA FVLFTVTNAE LANGIYTATK SWIEGSLGWY
YVAVVSSVLF FTVWVGFSRF GTLRLGKDDE RPEFSNFSWF AMLFSAAVGT GLLFWSIAEP
LMHMQGNPYM DMAGVAAGSA EAAQIALRIT MFHWGLHGWC IYIVVGLVLA YFTYRRGLPL
TIRSALYPLL GERIHGPIGH AVDLLAIFST LFGTATTLGL GVSQMNAGLS YMFGWEISTT
NQLLLIAGTS VVATFSAVSG VRRGILWLSE WNIRLSSILF LFLLLAGPTV FLLGLYATSI
GDYLAHFIPM GLWTDSDPER QWQGWWTIFY WGWWLSWGPF VGMFIARISR GRTVRQVVVG
GMLASTLGAF LWIVIMGGTG VYLQLNGVDL ASVANSDLTM VLYKTIEGLG VEWAILPMAG
LATLMIVSWF VTSADSATLV ICTILSQGDH NPPQRYRIIW GLGLGALAGV LLLAGGLQGL
QAATIAAALP FSLVLLLICY CLVKALHQEE SALQRTAEPR VGARVS
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