| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3373 |
|---|
| Symbol | |
|---|
| ID | 5105845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3722395 |
|---|
| End bp | 3724056 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640504629 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_001188857 |
|---|
| Protein GI | 146308392 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCAAG CGCCCCTGGA TGCCTATGAC TATCTGATCG TCGGTGCCGG CCCGGCCGGC
TGCCTGCTGG CCAATCGGCT GTCTGCCGAC CCTGGCGTCA GCGTACTGCT GATCGAGGCA
GGCGGGCGCG ACAACTACCC CTGGATCCAC ATCCCGGTCG GCTACCTCTA CTGCATCGGC
AACCCGCGTA CCGACTGGTG CTACAGCACC GAGGCCGACC CCGGCCTGCA CGGGCGTAGC
CTCAAGTACC CGCGTGGGCG GGTGCTCGGC GGCTGTTCTT CGATCAACGG CATGATCTAC
ATGCGCGGCC AGGCGGCCGA TTACGATGGC TGGGCGGCGG CCGGCAATCC TGGCTGGGCC
TGGCGCGACG TGCTGCCCCT GTTCAAACGT TCGGAAAATC ACTTTGCCGG CGCCAGCGAC
CTGCATGGCG GCGATGGCGA GTGGCGGGTC GAGCGCCAGC GTCTGTCCTG GGACATTCTC
GAAGCCTTTC GTGCGGCGGC GGCGCAGAGC GGCATTGCCA GCGTCGATGA CTTCAATGGC
GGCGACAACG AGGGCTGCAG CTACTTCCAG GTCAACCAGA AGCGCGGTGT GCGCTGGAAT
GCGTCCAAGG CCTTTCTGCG AGACATACGC CAGCGTGCGA ATCTGCAGGT GCTGACAGGC
GCCGAAGCCG AGCGCCTGGA ATTGGAGGAC GGCCGCGCCA GCACCTTGCA TCTGCGTTGG
CAGGGGCAGG CCCAGCGGGT CAGGGCGCGC CGCGAGATCG TTCTCTGCGC CGGCGCCATC
GGCTCGCCGG CCTTGCTGCA GCGTTCCGGT ATCGGCCCAC GGCCCTTGCT CGAACGCCTC
GGCATCGGGG TGAAGCATGA GCTGCCGGGC GTCGGCGAGA ACCTGCAGGA TCACCTGCAA
TTGCGCCTGA TCTACCGCGT CGAGGGGGTG AAGACGCTCA ATCGCATCGT CGCCACGCCC
TGGGGCAAGC TGGGCATGGG CCTGGAATAC CTGCTCAAGC GCAGTGGGCC GCTGTCCATG
GCGCCCAGCC AGTTGGGCGC CTTCGCCAAA TCCGACCCCG GCCAGGCGCG TGCCAACCTG
CAGTATCACG TGCAGCCGCT GTCGCTGGAG CGCTTTGGCG AGCCCTTGCA CGATTTCCCG
GCCTTTACCG CCTCGGTGTG CAACCTGCGC CCGCATAGTC GTGGGCGTGT CGCGATCACT
TCGGTTGATG CTGCCGTCGC GCCATCGATC CAGCCCAACT ACCTGAGCGA CGAGCGCGAC
CTGCAGGTGG CCGCCGATGC CATTCGCCTG ACCCGGCGCA TCGTCGCTGC ACCTGCCCTG
GCCGACTACC GGCCGCAGGA GTACAAGCCC GGGCCGGATT ACCAGAGCGA GGAAGATCTG
CAGCGCGCAG CGGGCGAGAT CGGCACCACC ATCTTCCATC CGGTGGGCAC CTGCGCCATG
GGGCAGGGGC AGGGCGCGGT GGTCGATGCC CGCTTGCGCG TGCACGGTAT CGCCGGTTTG
CGGGTGGTCG ATGCCTCCAT CATGCCGACC ATCACCTCCG GCAATACCTG CTCGCCAGTG
CTGATGATCG CGGAGAAGGC CGCGCAGATG ATCGCCGCCG ATGCGCGCGC GGCGATAAGC
AGGGTGTCGC AGCACGAGCC TGATTGCGCG GTGAGTGCAT GA
|
|---|
| Protein sequence | MSQAPLDAYD YLIVGAGPAG CLLANRLSAD PGVSVLLIEA GGRDNYPWIH IPVGYLYCIG
NPRTDWCYST EADPGLHGRS LKYPRGRVLG GCSSINGMIY MRGQAADYDG WAAAGNPGWA
WRDVLPLFKR SENHFAGASD LHGGDGEWRV ERQRLSWDIL EAFRAAAAQS GIASVDDFNG
GDNEGCSYFQ VNQKRGVRWN ASKAFLRDIR QRANLQVLTG AEAERLELED GRASTLHLRW
QGQAQRVRAR REIVLCAGAI GSPALLQRSG IGPRPLLERL GIGVKHELPG VGENLQDHLQ
LRLIYRVEGV KTLNRIVATP WGKLGMGLEY LLKRSGPLSM APSQLGAFAK SDPGQARANL
QYHVQPLSLE RFGEPLHDFP AFTASVCNLR PHSRGRVAIT SVDAAVAPSI QPNYLSDERD
LQVAADAIRL TRRIVAAPAL ADYRPQEYKP GPDYQSEEDL QRAAGEIGTT IFHPVGTCAM
GQGQGAVVDA RLRVHGIAGL RVVDASIMPT ITSGNTCSPV LMIAEKAAQM IAADARAAIS
RVSQHEPDCA VSA
|
|---|
| |