Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3213 |
Symbol | |
ID | 5106542 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 3552906 |
End bp | 3553790 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640504470 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001188698 |
Protein GI | 146308233 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.772963 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 0.565798 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGGAA TTGAGTGGGA AAGCCAGCGG GTGTTCCTCG CGGTACTTCG ATCGGGAAGC CTGTCCGGTG CCTCGCGGCT CCTGGGCATA GCCCAATCCA CGGCCCGCCG GCGACTAGAG AGCCTCGAGG GCTCGCTCGG ACTTAGCCTG TTCACTCGTA CTTCAACCGG CCTGACGCCC ACTGCCTCTG CACGCCGACT CATTCATCAC GTGGAGTCGA TGGATATCGC GGCACAGGCG TTCAATCGCA TGGCCAGCTC GGAGACGGAG GTTTCCCGAG GCACCATCAG AATAACGAGC AGTGACCTGT TGGGGGTCGA GGTGATGCCA CGGCTGTTGC GTGACTTCCA CCATGACCAT CCTGACCTGA ACCTCCAGCT GAGCATCAAC GATCAGATGG AAGATCTTGC CCGGCAGGAG TCGGACATCG CGGTGCGCCT GGTGCGCCCC AGCGAAGCTG GCGTTGTCGT CCGCCGAACC GGTGCCTTAC GTGTTGGGCT TTATGCCAGC GCCGAGTGCC TGGCGCGCTA CGAGCTGCCT GCCAGTCTCG CCGTCTTGAG GCAGGCTCCG CTGATCGGCC CTGATCGACG CACTGCCGAT CTGCGTCGAC TGGTCGAGCT AGGTTTTTGC GAAGCAGACC AGCGCTTTGC AATCGCCACC GACAACCATC TCGCACAGCT CGCAGCGATC CGTGCCGGTC TGGGCTTTGG CCTGTGCCCG GTCACTATCG CCGAGAACTA CCAATTGATC CGGGTTCTGC CGGAAAGCTT CGGCTTCGAG ATAGACGTAT GGATTGCCAT GCATTCCGAC CTTCGCAGGA TCAGTCGCAT TTCGCGAACG TTCGAGGCTC TCGGCCACGC CTTGCATATG GCGCTGACCA AATAG
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Protein sequence | MNGIEWESQR VFLAVLRSGS LSGASRLLGI AQSTARRRLE SLEGSLGLSL FTRTSTGLTP TASARRLIHH VESMDIAAQA FNRMASSETE VSRGTIRITS SDLLGVEVMP RLLRDFHHDH PDLNLQLSIN DQMEDLARQE SDIAVRLVRP SEAGVVVRRT GALRVGLYAS AECLARYELP ASLAVLRQAP LIGPDRRTAD LRRLVELGFC EADQRFAIAT DNHLAQLAAI RAGLGFGLCP VTIAENYQLI RVLPESFGFE IDVWIAMHSD LRRISRISRT FEALGHALHM ALTK
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