| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3210 |
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| Symbol | |
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| ID | 5106539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3549764 |
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| End bp | 3551386 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640504467 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001188695 |
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| Protein GI | 146308230 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.1071 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.711743 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGCTTC CACAACCGAT CCGAGCAACC CCGGAGGCCA CTTTGACAGC ACTTAACGAT
TCACCTCTCG TTCCGGAAAT TCGCCAGGCG CGCAGTGATT CGGTCGAAAG ACGCGCGGGG
GCCCGTGAGT GGATCGGGCT GGCACTGCTT GCACTGCCGA CCATCCTGCT CGGGCTTGAC
CTGACGCTGC TGCATCTGGC GTTGCCTGCG CTGTCAGTGG ATTTGCGCGC GACCAGTGCG
CAGGCACTCT GGATCGTTGA TGCCTATGGC TTCATGATTG CCGGCTTTCT CATCACGATG
GGAACGCTGG GGGATCGAAT CGGGCGGCGC AAGCTGCTGA TGGTCGGCGC AGCCGCTTTC
GGGGTTGCCT CCCTGATGGC GGCCTATTCG ACCAGTGCCA CCATACTGAT TGCGGCGCGT
GCTGTGCTGG GTGTAGCGGG CGCGACGCTG ATGCCATCGA CGCTGGCACT GATCAGCAAC
ATGTTTAACC ATCCCCACCA GCGGGCCTTG GCCATCGGGG TGTGGGCGAC CATGTTTGCA
CTGGGCATGG CGGCCGGCCC GGTGGTTGGG GGCATCTTGC TGGCGCATTA CTGGTGGGGA
GCGGCATTTC TCGTGGCGCT ACCGGTCGTA GGATTATTGC TGGTTGCCGC GCCGTTTCTC
CTGCCGGAGT ACCGCGCTCC GCAACAGGGG CGGTTGGATC TGTCCAGTGT TGTGCTGTCA
CTGCTTGCCT TGCTACCGAT CGTCTATGGC ATCAAGCAAC TGGCCAAGGA CGGAATAGTG
GCCAATGCCA CGCTGGCTAT CGTGACAGGG GTTGCCTTCA TGCTTCTGTT CATCCGACGA
CAACGCCGAT TGAGCAGTCC ATTGATCGAC CTCGATCTGT TCTCCAGCCG GGCATTCAGC
GTCGCCCTGG TGGTACTCCT GGTTGGCCTC ATCGGCGTAG GTGGGACGAT GCTGCTGGTG
AATCAGTACC TGCAACTGGT GGCGGGGTTG TCACCTTTGG CGGCCGGGCT GTGGATGGGG
CCTCCGGCAC TCGCCATGCT GGTGGCAGGG ATTACGGCAC CACTGCTTGC AAGGAAAATT
CGGCCGGGCT ATGTGATTGC GGGCGCGCTG GGGCTATCCG TAGTGGGCTA TCTGATGTTG
ACCCAGCTCG ATCACACGCC TCGCGGAATT GGACTGGCGA CTGCATCATT CTCGCTGGTG
TATCTCGGCT TGGGCACCAT TGCCGCGCTG GGAACGGATC TGGTGGTGGG CACCGCGCCA
GGTGAAAAAG CGGGATCAGC CTCAGCCATT TCGGAGACGG TTCAGGAGCT TGGCCTGGCT
GTGGGCATCG CCACGCTGGG CAGCCTTACG ACCGCAATCT ATCGCACCAG GATGACCGAT
CAGGTCAATG CCTTCCTGGC TCAGGACATT CAACGGGCAG TACTGGACAG TCTTGCAGGT
GCCAAAACGG TTTCACAGGA ACTGCCTGCT GGTGTGCTGG AACAGGCCCA GGCCGCGTTC
ATGACTGGTT TCAACTTGGC AGCGGTAACC AGCGCTATCT GCATCGCTGT CCTGGCTGCG
CTGGCAGCGA TCACGCTGCG GCATATCGGC GTAGACGGTG ACACTGACGA AGTGACTTCC
TAA
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| Protein sequence | MWLPQPIRAT PEATLTALND SPLVPEIRQA RSDSVERRAG AREWIGLALL ALPTILLGLD
LTLLHLALPA LSVDLRATSA QALWIVDAYG FMIAGFLITM GTLGDRIGRR KLLMVGAAAF
GVASLMAAYS TSATILIAAR AVLGVAGATL MPSTLALISN MFNHPHQRAL AIGVWATMFA
LGMAAGPVVG GILLAHYWWG AAFLVALPVV GLLLVAAPFL LPEYRAPQQG RLDLSSVVLS
LLALLPIVYG IKQLAKDGIV ANATLAIVTG VAFMLLFIRR QRRLSSPLID LDLFSSRAFS
VALVVLLVGL IGVGGTMLLV NQYLQLVAGL SPLAAGLWMG PPALAMLVAG ITAPLLARKI
RPGYVIAGAL GLSVVGYLML TQLDHTPRGI GLATASFSLV YLGLGTIAAL GTDLVVGTAP
GEKAGSASAI SETVQELGLA VGIATLGSLT TAIYRTRMTD QVNAFLAQDI QRAVLDSLAG
AKTVSQELPA GVLEQAQAAF MTGFNLAAVT SAICIAVLAA LAAITLRHIG VDGDTDEVTS
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