| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3139 |
|---|
| Symbol | |
|---|
| ID | 5107461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3473919 |
|---|
| End bp | 3475841 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640504395 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001188624 |
|---|
| Protein GI | 146308159 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.753261 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0120166 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCT GGTTTGCCAA CCTCAGCGTC ACCCGCAAGC TCGCGCTCGG CTTCGGCCTG
GTGCTGGCCC TTACCCTGGC GCTGGCCTGG ACCGCCTGGA GCGGCCTGGG CAGCGTCATC
CAGCGCAGCA CCTGGATGAG CGAGATCTCC CAGCTCAACA CCACCCTGAC CAACCTGCGC
ATCGCCCGTC TGCAGTTCAT GCTGGCCAAG GGCGACGCCC CCAGCAGCGA GCGGCTGCTG
ACCAACCTCG ACATCTATCT GCAGCAGCAG AAGAAGCTGC TCGGCACCTT CACCAACCCG
GTGAACGTCA AGCTGCTGCA GGAGCAGGAC CGCTACAACC AGGACTACCA GCGCTCGCTG
GGCGGCATGC GTGCCGCCTA CGCCGCGGCC GACGAGGCGC GGCGCAAGGT GCTGGCGGAA
GATCAGCAGC TCGGCGAACT GCTCGCCGCC ATGCAGCGCA GCGTGCAGCT GCTGCCGGAA
TACGACAGCA GCCGTTTCGC CCAACTGCAG GCGCTGACCC ACACGCAGGC CGAACTGCTG
CGTCTGCGCT ACCTGCTCGA GCGTTACGAG AGCACCCCCG ATGCCCAGAC CGAGCAAGCC
CTGGCCGAGC GCATCGCCGC TGCCCGCGCC AGCCTCGGCG CACTGCAGCA GGCCTTCGGT
AGCGCCCAGC AGGATGCGGT GCAACGCATC TCCGCGGCGC TGGGCCAGTT CGAGCAGACC
ATGCAGGCGT TCAAGAACGC CACCGCCGAC ATCGCCCGCA CCCGCCAGGA GATGACCGAC
CAGCAGGGCG AGATCGTGCG CATCAGCGAG GCGCTGTACA AGTTCCAGAT GGAGCGCATG
GCCATCGAGA GCGCCCAGGC GCGCAGCCTG CAGATCGGTG CCACGCTGCT GGCCATGCTC
TTCGGCGTGC TGGCCGCGTG GATCATCACC CGCCAGATCA CCCGTCCGCT GCAGGACACC
CTGGGCGCGG TGCAGCGCAT CGCCGATGGC GACCTGACCG CCAGCGTGCG GGTCGACCGT
CGCGACGAGA TGGGCCAGCT GCAGCATGGC ATCCAGCACA TGGCCACGAC CCTGCGCGAG
CTGATCGGCG GCATCCGCGA CAGCGTCACC CAGATTGCCA GCGCTGCCGA GGAGCTGTCG
GCCGTCACCG AGCAGACCAG CGCCGGTGCC AACAGTCAGA AGAGCGAGAC CGACCAGGTG
GCCACCGCCA TGCACGAGAT GTCGGCCACC GTGCAGGAAG TGGCGCGCAA CGCCGAGCAG
GCCTCGCAGG CGGCCAACGA CGCCGACGGC CAGGCACGCC TGGGCGATCA GGTGGTGGCC
GAGGTGATCG TGCAGATCGA ACGCCTGGCC GCCGAGGTCA GCCGCTCCAG CGAGGCGATG
CACGGCCTGC AGCAGGAGAG CGACAAGATC GGCAGCGTGA TGGACGTGAT CAAGTCGGTG
GCCGAGCAGA CCAACCTGCT GGCGCTCAAC GCGGCCATCG AGGCGGCGCG TGCCGGCGAG
GCGGGGCGTG GCTTCGCCGT GGTCGCCGAC GAGGTGCGCG GCCTGGCGCA GCGCACGCAG
AAATCCACCG AGGAGATCGA GGCGCTGATC GCCGGCCTGC AGAGCGGTAC CCAGCAGGTG
GCGGCGGTGA TGCGCAACAG CCGCAACCTC ACCGACAGCA GCGTCGAGCT GACGCGCAAG
GCCGGCGACT CGCTGGGCAG CATCACCCTG GCGGTGTCCA ACATCCAGTC GATGAACCAG
CAGATCGCTG CCGCCGCGGA AGAGCAGAGC GCGGTGGCCG AGGAGATCAG CCGCAGCATC
CTCAGCGTGC GCGACGTCTC CGAGCAGACC GCCACCGCCA GCGACGAGAC GGCCAAGTCC
TCGGCCGAAC TGGCGCGTCT GGGCGGGCAG CTGCAGGCGA TGGTCAGCCG CTTCCGCGTG
TAG
|
|---|
| Protein sequence | MNTWFANLSV TRKLALGFGL VLALTLALAW TAWSGLGSVI QRSTWMSEIS QLNTTLTNLR
IARLQFMLAK GDAPSSERLL TNLDIYLQQQ KKLLGTFTNP VNVKLLQEQD RYNQDYQRSL
GGMRAAYAAA DEARRKVLAE DQQLGELLAA MQRSVQLLPE YDSSRFAQLQ ALTHTQAELL
RLRYLLERYE STPDAQTEQA LAERIAAARA SLGALQQAFG SAQQDAVQRI SAALGQFEQT
MQAFKNATAD IARTRQEMTD QQGEIVRISE ALYKFQMERM AIESAQARSL QIGATLLAML
FGVLAAWIIT RQITRPLQDT LGAVQRIADG DLTASVRVDR RDEMGQLQHG IQHMATTLRE
LIGGIRDSVT QIASAAEELS AVTEQTSAGA NSQKSETDQV ATAMHEMSAT VQEVARNAEQ
ASQAANDADG QARLGDQVVA EVIVQIERLA AEVSRSSEAM HGLQQESDKI GSVMDVIKSV
AEQTNLLALN AAIEAARAGE AGRGFAVVAD EVRGLAQRTQ KSTEEIEALI AGLQSGTQQV
AAVMRNSRNL TDSSVELTRK AGDSLGSITL AVSNIQSMNQ QIAAAAEEQS AVAEEISRSI
LSVRDVSEQT ATASDETAKS SAELARLGGQ LQAMVSRFRV
|
|---|
| |