Gene Pmen_3029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3029 
Symbol 
ID5107509 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3352990 
End bp3353904 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content67% 
IMG OID640504286 
ProductLysR family transcriptional regulator 
Protein accessionYP_001188515 
Protein GI146308050 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.000686925 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACCGCT GGGAAGGGCT CGACGAATTC GTCGCCGTCG CAGAATGCGG CCAGTTCAGC 
GCCGCTGCCG AGCGCCTGGG GCTGTCCACG TCGCAGGTCA GTCGCCAGGT GGCACGCCTG
GAAGAACGCC TGCAGAGCCG CCTGTTCTAC CGCAGCACCA GGCGGGTGGC GCTGACCGAG
GCCGGCCAGT TGTTTCTGCA ACACTGCCAG CGCCTGCAGG ATGCCCGCGA GGAAGCCCTG
CGCGCGGTTG GCGATCTCGG CGCTGAACCC AAGGGGCTGC TGCGCATGAC CTGCGCGGTG
GCGTATGGCG AGCGTTTCAT CGTGCCGCTG GTCAACGACT TCATGGCGCG GCATCCGCAG
TTGCGCGTGG AGATCGAACT GTCCAACCGC CAGCTCGACC TGCTGCACGA AGGCCTGGAC
CTGGCCATAC GCCTGGGTCG CCTGCAGGAC TCGCGCCTGA TGGCCGCGCG CCTGGCCCCG
CGAGAAATGT ACCTGTGCGC GGCCCCCGAG TATCTGCAGC GTTACGGACG TCCGCACTCG
CTCTCCGAAC TGGCCCGGCA CAACTGCCTG ATCGGCAGCA GCGATCACTG GAGCTTCGTC
GACAACGGAC GGGAGACGCA GATGCGCGTG CAGGGCAACT GGCGCTGCAA CAGCGGCCAG
GCGGTACTCG ATGCGGCGCT GCGTGGCTTC GGCCTGTGCC AGCTACCCGA TTACTACGTG
CTGGAGCATC TGGCCAGCGG CGCACTGGTG TCCCTGCTGC AACAGCACCG CCCGCCGAAT
ACGGCGGTCT GGGCGCTCTA CCCGCAGCAA CGGCATCTCT CGCCGAAAGT GCGCCAACTG
GTCGACCACC TCAAGGCGGG CTTGAGCGAG CGCATCGAGT ACCGCCCGCA ACAGAATGTC
ACAGCCAACG GTTGA
 
Protein sequence
MNRWEGLDEF VAVAECGQFS AAAERLGLST SQVSRQVARL EERLQSRLFY RSTRRVALTE 
AGQLFLQHCQ RLQDAREEAL RAVGDLGAEP KGLLRMTCAV AYGERFIVPL VNDFMARHPQ
LRVEIELSNR QLDLLHEGLD LAIRLGRLQD SRLMAARLAP REMYLCAAPE YLQRYGRPHS
LSELARHNCL IGSSDHWSFV DNGRETQMRV QGNWRCNSGQ AVLDAALRGF GLCQLPDYYV
LEHLASGALV SLLQQHRPPN TAVWALYPQQ RHLSPKVRQL VDHLKAGLSE RIEYRPQQNV
TANG