Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3003 |
Symbol | |
ID | 5107484 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 3323366 |
End bp | 3324529 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640504261 |
Product | diguanylate phosphodiesterase |
Protein accession | YP_001188490 |
Protein GI | 146308025 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0000176635 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGCTCGACG GATTGCCTTT CGCCGTCTTC CAACCCTTCA TCGACACGGC CACCGGCCGC ATAGCTGGCG TCGAGGCGCT GGCTCGACTG CGCGATAGCG ATGGCCTGGT GCACTCTGCT GGGCCCTTGT TCGCCGACCC GAAAACGCCC CCGGCCGCCC TGCGCCGCCT CGACCGCCAG GTGCGCGAGG ACGCCTTGCG CCGTTTTCAC CAGGCACCCA AGGACTGGTT TCTCAGCCTG AACATCTCGC CACGCTGGAT CAGCCGCCTG CGCCCGACCC AGCCCTTGCC CAGCCTGCTC CAACTGCAAC GCAGCGGCAT CGACCCGGCA CGCATCGTCT TCGAGATCAC CGAACTGGGC GGCGCCAGCC AGCGCCTGCC CAGCGTCGTC TCGCGCTACC GCGAGGCCGG CGCGCGCATC GCCATCGATG ACTTCGGCGC CGGCTACTCG CAGCTCGACC GCGTGCTGGC GCTGCAGCCG GACATTCTCA AGCTGGACAT GCGCCTGTTC CAGGAAGCAG CCCGCGGCGG CCCCAGCGGC GAGGTGGTCA AGGCACTGGC CCAGATGGCG GAGAAGACCG GCTGCTGGAT CATCGCCGAA GGCGTGGAAA CCGAAGCCGA GCTGAACTTT GCCCTGGAGT GCGGCGCCCG CTACGTGCAG GGCTTCCTGT TCGCCAGAGC GGAGGAGGAA TTCTTCGCCA GCGACGCCTT CGTCGGACGT TTCGCGCGTC TGCGCGACAG CTACGTGCAA CAGAAGCTCG CCGAACGCGC CCGCCTGGTG AGCCTGCGCC AGCAGTTGGC CGAACTGATG GGCGAACTCC GGCAGTGGGC CGAAAGCGGC GCCTCGGCAG CTAGCCTGCT GGCGCCGGAC AACTATCCCT GGCTACTGCG CATCTACCAA TGCGATCGCC ATGGCACCCA ACTGACGCCG AACCTGGAGT GGCGCCAACA GACCTGGCAC GCCGATGACC GCTACCTCGG GCACAACTGG TCATGGCGCC CCTACTTCTA TCAACTGCTG GCCGAAGGCT GGGAAGAGCG GCGCCTGACC CTCTCCACCA CCTACCGCGA CGCCACCAGC AACCAGTACT GCCTGACCGC CGGCCAGTTC ATCGACAACG GCCGCCGCCT GCTGCTGGTG GATATCGACG CTGCGGGCCT GTAG
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Protein sequence | MLDGLPFAVF QPFIDTATGR IAGVEALARL RDSDGLVHSA GPLFADPKTP PAALRRLDRQ VREDALRRFH QAPKDWFLSL NISPRWISRL RPTQPLPSLL QLQRSGIDPA RIVFEITELG GASQRLPSVV SRYREAGARI AIDDFGAGYS QLDRVLALQP DILKLDMRLF QEAARGGPSG EVVKALAQMA EKTGCWIIAE GVETEAELNF ALECGARYVQ GFLFARAEEE FFASDAFVGR FARLRDSYVQ QKLAERARLV SLRQQLAELM GELRQWAESG ASAASLLAPD NYPWLLRIYQ CDRHGTQLTP NLEWRQQTWH ADDRYLGHNW SWRPYFYQLL AEGWEERRLT LSTTYRDATS NQYCLTAGQF IDNGRRLLLV DIDAAGL
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