| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2981 |
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| Symbol | |
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| ID | 5107699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3304968 |
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| End bp | 3307472 |
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| Gene Length | 2505 bp |
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| Protein Length | 834 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640504239 |
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| Product | nitrate reductase catalytic subunit |
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| Protein accession | YP_001188468 |
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| Protein GI | 146308003 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01706] periplasmic nitrate reductase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.237893 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.139992 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTTT CCCGCCGTGA ATTCGCCAAA GCCAACGCCG CTGCCATCGC CGCAGCGGCG
GCCGGCCTGC CGCTTGCCAG CACCGCCAGC AACCTGATCA CCGAGGCGGA CATGACCCGC
CTGGACTGGA ACAAGGCGCC CTGCCGCTTC TGCGGTACCG GCTGCAGCGT GATGGTCGCC
ACCCGCGACA ACCGCGTGGT GGCCACCCAT GGCGACGTCA AGGCCGAGGT CAACCGCGGC
CTGAACTGCG TCAAAGGCTA CTTCCTGTCG AAGATCATGT ACGGCGTCGA CCGCCTCACC
CAGCCGCTGC TGCGCATGAA GAACGGTGTG TACGACAAGC AGGGCGAATT CCAGCCGGTG
AGCTGGGACC AGGCTTTCGA CATCATGGCG CAGAAGATCA AGCAGGCCAT CGCCGAGCAG
GGCCCGGAGG CCGTCGGCAT GTTCGGCTCC GGCCAGTGGA CGGTGTGGGA AGGCTACGCC
GCCAACAAGC TGATGAAGGC CGGCTTTCGC AGCAACAACA TCGACCCGAA CGCGCGCCAC
TGCATGGCGT CGGCGGTGAT GGGCTTCATG CGCACCTTCG GCATGGATGA GCCGATGGGT
TGCTACGACG ACATCGAGGC CGCCGATGCC TTCGTACTGT GGGGCTCGAA CATGGCCGAG
ATGCACCCGA TCCTCTGGAG CCGGGTCACC GATCGGCGCC TCAGCCACCC GAACACCAGG
GTCGCGGTGC TTTCCACCTT CGAGCACCGC AGCTTCGATC TGGCCGACAT CCCGCTGGTA
TTCAAACCGC AGACCGATCT GCTGATCCTC AACTACATCG CCAACCACAT CATCGAAAGC
GGTGCGGTGA ACAAGGACTT CGTCGGCAAG CACACCAAGT TCGCCCGCGG CGCCGACGAC
ATCGGCTACG GTCTGCGCGC CGACAATCCG CTGGAGATGC AGGCCAAGAA CGCGGCCAAG
GCCAACACCT GGGAAGACAT GTCCTTCGAG CAGTTCGCCG CCTTCGTCAA ACCTTACACG
CTGGAGCGCA CCGCCAAGGA AAGCGGCGTG GCGGCCGAGC GTCTCAAGGC GCTGGCCAAG
CTGTACGCCG ACCCCAAGCG CAAGGTCATG TCGTTCTGGA CCATGGGTTT CAACCAGCAC
ACCCGCGGCG TCTGGGCCAA CAACCTGATC TACAACCTGC ACCTGCTCAC CGGCAAGATC
AGCGAGCCGG GCAACAGCCC CTTCTCCCTC ACCGGCCAAC CGTCGGCCTG CGGCACCGCG
CGCGAGGTGG GCACCTTCTC CCATCGCCTG CCCGCCGACA TGCTGGTGGC CAACCCCAAG
CACCGCGAAA CCGCCGAGAA GATCTGGAAG CTGCCGCCCG GCACCATTCA GGAAAAGCCC
GGCTTCCATG CCGTGGAGCA GAGCCGCAAG CTCAAGGACG GCGTGCTCAA GGTCTACTGG
ACCCAGGTCA GCAACAACAT GCAGGCCGGC CCCAACGTGA TGCAGGAGAT CCTCCCCGGC
TGGCGCAACC CGCAGGCCTT CGTCATCGTC TCCGATGTCT ACCCCACCGT CTCGGCCCAG
GCCGCCGACC TGATCCTGCC CAGCGCCATG TGGGTGGAGA AGGAAGGCGC CTACGGCAAT
GCCGAGCGCC GCACGCAGTT CTGGCATCAA CTGGTGAAGG CGCCGGGCGA GGCCAAGTCC
GACCTCTGGC AACTGGTGGA ATTTTCCAAG CGCTTCACCA CCGACGAGGT CTGGCCCGCC
GAACTGCTGG CCAAGGCCCC GGATTACAAG GGCAAGACGC TGTATCAGGT GCTGTTCGCC
AATGGCCAGG TCGACCAGTT CCCCAGCGAG CAGATCGAGG CCGGTTACGC CAACGACGAG
GCCGAGGCCT TCGGCTTCTA CCTGCAGAAG GGGCTGTTCG AGGAATACGC CCGGTTCGGC
CGCGGCCACG CCCACGACCT GGCGCCGTTC GACAGCTACC ACGCCGAGCG CGGCCTGCGC
TGGCCGGTGG TCGATGGCAA GGAGACGCGC TGGCGCTATC GCGAGGGCCA CGACCCCTAT
GTGGAAAAAG GCAGCGGCGT GCAGTTCTAC GGTTACCCGG ACAAGCGCGC GCTGATTTTC
GCCCTGCCCT ACGAGCCGCC AGCCGAGGCG CCGGATGACG AGTTTCCGTT CTGGCTCAGC
ACCGGCCGCG TGCTGGAGCA CTGGCACACC GGCAGCATGA CCCAGCGCGT CGAGGAGCTG
CACGGCGCGG TGCCCGATGC CCTGGTGTAC ATGCACCCGG ACGACGCCAA GGCACTCAAG
GCGCGACGTG GCAGCGAGGT CAAGGTGATC AGCCGGCGCG GCGAGATCCG CGCTCGCATC
GAAACCCGCG GGCGCAACAA GCCGCCACGC GGTCTGGTGT TCGTGCCCTT CTTCGACGCC
AACAAGCTGA TCAACAAGGT CACCCTGGAC GCCACCGACC CGATCTCCAA GCAGACCGAT
TACAAGAAGT GTGCGGTGAA GATCGAACTG GTCAGCCTGG CCTGA
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| Protein sequence | MKLSRREFAK ANAAAIAAAA AGLPLASTAS NLITEADMTR LDWNKAPCRF CGTGCSVMVA
TRDNRVVATH GDVKAEVNRG LNCVKGYFLS KIMYGVDRLT QPLLRMKNGV YDKQGEFQPV
SWDQAFDIMA QKIKQAIAEQ GPEAVGMFGS GQWTVWEGYA ANKLMKAGFR SNNIDPNARH
CMASAVMGFM RTFGMDEPMG CYDDIEAADA FVLWGSNMAE MHPILWSRVT DRRLSHPNTR
VAVLSTFEHR SFDLADIPLV FKPQTDLLIL NYIANHIIES GAVNKDFVGK HTKFARGADD
IGYGLRADNP LEMQAKNAAK ANTWEDMSFE QFAAFVKPYT LERTAKESGV AAERLKALAK
LYADPKRKVM SFWTMGFNQH TRGVWANNLI YNLHLLTGKI SEPGNSPFSL TGQPSACGTA
REVGTFSHRL PADMLVANPK HRETAEKIWK LPPGTIQEKP GFHAVEQSRK LKDGVLKVYW
TQVSNNMQAG PNVMQEILPG WRNPQAFVIV SDVYPTVSAQ AADLILPSAM WVEKEGAYGN
AERRTQFWHQ LVKAPGEAKS DLWQLVEFSK RFTTDEVWPA ELLAKAPDYK GKTLYQVLFA
NGQVDQFPSE QIEAGYANDE AEAFGFYLQK GLFEEYARFG RGHAHDLAPF DSYHAERGLR
WPVVDGKETR WRYREGHDPY VEKGSGVQFY GYPDKRALIF ALPYEPPAEA PDDEFPFWLS
TGRVLEHWHT GSMTQRVEEL HGAVPDALVY MHPDDAKALK ARRGSEVKVI SRRGEIRARI
ETRGRNKPPR GLVFVPFFDA NKLINKVTLD ATDPISKQTD YKKCAVKIEL VSLA
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