Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2969 |
Symbol | |
ID | 5107687 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3292728 |
End bp | 3293909 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640504227 |
Product | L-carnitine dehydratase/bile acid-inducible protein F |
Protein accession | YP_001188456 |
Protein GI | 146307991 |
COG category | [C] Energy production and conversion |
COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0453018 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.0946955 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGGCC CACTGTCTTC GCTGAAAGTA CTCGATTTTT CCACCCTGCT GCCCGGGCCG TTCGCCTCGC TGCTGCTGGC CGACATGGGC GCCGAGGTGC TGCGTGTGGA ATCGCCCACG CGCATGGACC TGGTACGCGT GCTGCCACCG CACGACGGCG GCACCTCCAC CAGCCACGCC TATCTCAATC GCAACAAGCG CAGCATCGCC CTGGATCTCA AGCGCCCCGA GGCGGTGGAG GTGGTGAAGA AACTGGTGGC CGAGTACGAC ATCGTGCTGG AGCAGTTCCG CCCAAGGGTG ATGGACAAGC TGGGCGTCGG CTACGAGGCG CTCAAGGCGA TCAATCCGCG GCTGATCTAC GTGTCGATCA CCGGCTACGG CCAGACCGGG CCGTACCGGG ATCGCGCCGG GCATGACATC AACTATCTGG CACTGGCTGG CATCGCCAGC TACACCGGCC GTCGCGACAG CGGCCCGCTG CCGCTGGGCG TGCAGCTGGC GGATATCGCC GGCGGTTCCC TGCATGGAGT GATCGGCCTG CTCGCCGCGG TGGTGCAGCG CCAGGTCACT GGCCAGGGCC AGCAGGTGGA CGTGAGCATG ACCGACTGCG CCTTCAGCCT GCACGGCATG GCCGGCGCCG GCTATCTCGG TGCCGGCGTG GAGCCGGAGA TGGAGAATCA GGCGCTCAAT GGCGGCAGCT TCTACGACTA TTACCGCACC CGTGACGGTC GCTGGTTCTC GGTGGGCAGC CTGGAGCCGC AGTTCATGCA GCAGTTCTGC CAGGCGCTGG GGCGGCCCGA ACTGGCAGCG CGCGGCCTGT CGCCGAAGCC GGAAGATCAG CGAGCGCTCA AGCGCGAGAT CGAAATCGAG TTCGAAAAGC GCGATTTCGC CGACTGGCGC GAGCGTTTCG CTGCCTTGGA CGCCTGCGTC GAGCCCATGC TGCCGCTGTC CGAGGCGCTC GAACACCCAC AGATCAAGGC GCGTGCTCTG GTCGCCGAGG TGCCGCGCGA GGGGTTGCCG GCGCAGCCGC AACTGGCCTG CCCGCTGAAG TTCTCGCACG GGCTGCCGGC ACCCCGGCAT GTCGGGGCGG CGTTGGGCGC TCATACCGCG CAGGTGCTGG CCGAGCTGGG CTATGACGCC GAGCAGATCG CGATATTGCG CGCGGCCGGA GCGCTTGGCT GA
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Protein sequence | MTGPLSSLKV LDFSTLLPGP FASLLLADMG AEVLRVESPT RMDLVRVLPP HDGGTSTSHA YLNRNKRSIA LDLKRPEAVE VVKKLVAEYD IVLEQFRPRV MDKLGVGYEA LKAINPRLIY VSITGYGQTG PYRDRAGHDI NYLALAGIAS YTGRRDSGPL PLGVQLADIA GGSLHGVIGL LAAVVQRQVT GQGQQVDVSM TDCAFSLHGM AGAGYLGAGV EPEMENQALN GGSFYDYYRT RDGRWFSVGS LEPQFMQQFC QALGRPELAA RGLSPKPEDQ RALKREIEIE FEKRDFADWR ERFAALDACV EPMLPLSEAL EHPQIKARAL VAEVPREGLP AQPQLACPLK FSHGLPAPRH VGAALGAHTA QVLAELGYDA EQIAILRAAG ALG
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