| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2928 |
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| Symbol | |
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| ID | 5107646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3238916 |
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| End bp | 3243757 |
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| Gene Length | 4842 bp |
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| Protein Length | 1613 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640504183 |
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| Product | glutamate dehydrogenase (NAD) |
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| Protein accession | YP_001188415 |
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| Protein GI | 146307950 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2902] NAD-specific glutamate dehydrogenase |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.606686 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTTCT TTACGGCGGC CAGCAAAGCC GACTTCCAGC ACCAACTGCA AGCGGCCCTG
GCGCAGCACG TGAGTGAGCA GGCACTGCCA CAAATGGCCC TGTTCGCCGA ACAATTCTTC
GGCATCATCG CCCTCGAAGA GCTGACCCAG CGGCGCCTGT CCGATCTGGT CGGCTGCACG
CTGTCGGCCT GGCGCATGCT GGAGCGTTTC GATCACGGCT CGCCGCAGGT TCGCGCCTTC
AACCCCGACT ACGAGAAGCA CGGCTGGCAG TCCACCCATA CGGCGGTGGA AATTCTGCAT
GGCGATATTC CGTTCCTGGT CGACTCGGTG CGCATGGAGC TCAACCGTCG CGGCTACAGC
ATTCACACCC TGCAGAACAG CGTGTTCAGC GTGCGTCGTG ACGCGAACGG CGAACTGCTG
GAAATCCTCC CGCGCGGTAC CCAGGGCGAG GGCGTGCTGC AGGAAGCGCT GATGTTCCTG
GAGATCGATC GCTGCTCCAG CTCCGCCGAG CTGAAGACCC TGGAAAAAGC CATTCACGAA
GTCTTCGGCG ATGTGCGCAT GAGCGTCGCC GACTTCCAGC CGATGAAGGC CAAGGCGCGC
GAGCTGCTGG CCTGGCTGGA TCGCGCCAAG CTCAAGGTGG ACAAGGCCGA GCTCGAGGAA
ATCAAGGTCT ACCTCAACTG GCTGCTGGAC AACCACTTCA CTTTCCTCGG TTACGAGGAA
TTCACCGTCG CGCCCAGCGC CGACGGCGGC ACCATGGTCT ACGACGAGAA GTCCCTGCTC
GGCCTGTCCA AGCGCCTGCG TACCGGCCTG ACCGCCGAGG AGCTGCACAT CGAGCCGGAG
GCCGTGGCCT ACCTGCGCGA GCCGCAGCTG CTGTCCTTCG CCAAGGCGGC GGTACCGAGC
CGCGTGCACC GTCCGGCCTA CCCGGATTTC GTCTCCATCC GCGAACTCGA TGCCAAGGGC
AACGTGGTCA AGGAATGCCG CTTCATGGGC CTGTACACCT CGGCGGTGTA CGCCGAGAGC
GTGTGGAACA TCCCCTACAT TCGCCGCAAG GTGGACGTGA TCAAGCAGCG CTCGGGCTTC
GACAGCAGCG CCCACCTGGG CAAGGAACTG GCCCAGGTGC TGGAAGTGCT GCCGCGCGAT
GACCTGTTCC AGACCCCGGT GGACGACCTG TTCAACACCG CGCTGGCCAT CGTGCAGATC
CAGGAGCGCA ACAAGATTCG CGTGTTCCTG CGCCGCGATC CCTACGGCCG CTTCTGCTAC
TGCCTGGCCT ACGTGCCGCG CGACGTCTAT TCCACCGAAA CCCGCCTGAA GATCCAGCAG
GTGCTGATGG ATCGTCTGCA GGCCACCGAT TGCGAGTTCT GGACCTTCTT CTCCGAGTCG
GTACTGGCGC GCGTGCAGTT CATCCTGCGC GTCGACCCGA AGAACAAGAC CCAGATCGAC
CCCGTGCGCC TGGAGAAGGA AGTCATCCAG GCCTGCCGTT CGTGGAAGGA CGACTACGCC
AGCCTGATGG TGGAGAGCTT CGGCGAGGCC CAGGGCACCA ATGTGCTGGC CGAGTTCCCC
GGCGGTTTCC CGGCCGGCTA CCGCGAGCGT TTCGCCCCGC ATTCGGCGGT GGTGGACATG
CAGCACCTGC TCAGCCTGAG CAACGACAAA CCTCTGGTGA TGAGCTTCTA CCAGCCGCTG
GCGCAGGGCG ATCAGCAGCT GCACTGCAAG CTGTACCACG CCGACACGCC GCTGCCGCTG
TCCGACGTGC TGCCGATTCT GGAGAACCTC GGCCTGCGTG TGCTCGGCGA GTTCCCCTAC
AAGCTGCGCC GCAATGACGG CCGCGAATTC TGGATTCACG ACTTCGCCTT CACCTACGCC
GAAGGCCTGG ATGTCGACAT TCAGCAGCTC AATGACACGC TGCAGGACGC CTTCATCCAT
ATCGTCGGTG GCGATGCCGA GAACGATGCC TTCAACCGCC TGGTGCTGAT CGCCGCCATG
CCCTGGCGTG ACGTCGCTCT GCTGCGTGCC TATGCGCGTT ATCTCAAGCA GATCCGCCTG
GGCTTCGACC TCAGCTACAT CGCCTCGACC CTGATCAATC ACGCCGATAT CGCCAAGGAG
CTGGTGCGCC TGTTCCGCAC CCGTTTCTAC CTCGCGCGCA AGCTCACCGC CGAGGATCTG
GAAGACAAGC AGCAGAAGCT CGAGCAGGCC ATCCTGGCTG CGCTGGACAA CGTCGCCGTA
CTCAACGAAG ACCGCATCCT GCGTCGCTAC CTGGACCTGA TCAAGGCGAC CCTGCGTACC
AACTTCTTCC AGGCCGATGC CAGCGGCGCG GCCAAGTCCT ATTTCAGCTT CAAGCTCAGC
CCGCGCCTGA TCCCGGAGAT TCCGCGGCCG GTGCCGAAGT TCGAGATCTT CGTCTACAGC
CCGCGCGTCG AGGGTGTGCA CCTGCGCTTC GGCGACGTCG CCCGTGGCGG CCTGCGCTGG
TCGGATCGCG AGGAGGATTT CCGTACCGAG GTGCTCGGCC TGGTCAAGGC GCAGCAGGTG
AAGAACGCGG TGATCGTGCC GATGGGCGCC AAGGGCGGCT TCGTGCCGCG CAAGATGCCG
GTCGGCGGTT CGCGTGACGA GGTGATGGCC GAGGGCATCG CCTGCTATCG CATCTTCATC
AGCGGCCTGC TGGATATCAC CGACAACCTC AAGGAAGGCG AGGTGGTGCC GCCGGTCAAT
GTGGTACGCC ACGACGCCGA CGATCCCTAC CTGGTGGTGG CGGCGGACAA GGGCACCGCG
ACCTTCTCCG ACATCGCCAA CGGCATCGCT GCCGAGTACG GCTTCTGGCT CGGCGACGCC
TTCGCCTCCG GCGGTTCGGC CGGTTACGAC CACAAGGGCA TGGGCATCAC CGCCAAGGGC
GGCTGGGTCT CGGTGCAGCG CCACTTCCGC GAGCGCGGCA TCGACGTGCA GAAGGACAAC
GTCACCGTGA TCGGCATCGG CGACATGGCC GGCGACGTGT TCGGCAACGG CATGCTGCTG
TCGGACAAGC TGCAGCTGGT GGCCGCCTTC AACCACATGC ACATCTTCAT CGATCCGAAC
CCGGATGCGG CCAAGAGCTT CGCCGAGCGC AAGCGTCTGT TCGACCTGCC GCGTTCGAGC
TGGGCCGACT ACGACAGCAA GCTGATCTCC GAAGGCGGCG GCATCTTCCT GCGCAGCGCC
AAGAGCATCA CCATCACCCC ACAGATGAAG GCGCGCTTCG ACATCGCCGC CGACAAGCTG
GCGCCCACCG AGCTGCTCAA TGCGCTGCTC AAGGCACCGG TCGACCTGCT GTGGAACGGC
GGTATCGGTA CCTACGTCAA GTCAAGCAAG GAAAGCCACG CCGACGTCGG CGACAAGGCC
AACGACGCGC TGCGCGTGGA CGGTCGTGAA CTGCGCGCCA AGGTGGTGGG CGAGGGCGGC
AACCTGGGCA TGACCCAGCT CGGCCGCGTC GAGTTCGGCC TGCATGGCGG CGCCAGCAAC
ACCGACTTCA TCGACAACGC CGGCGGTGTG GACTGCTCCG ACCATGAAGT GAACATCAAG
ATTCTGCTGG GCGAGATCGT CTCGGGCGGC GACATGACCG AGAAGCAGCG CAACAAGCTG
CTGGCCGAGA TGACCGATGA CGTGTCCGAG CTGGTGCTGG GCAACAACTA CAAGCAGACC
CAGGCGCTGT CGCTGGCCGA ACGCCGCGCC CGCGAGCGCG TCGGCGAGTA CAAGCGCCTG
ATGAACGCGC TGGAGAGCGC CGGCAAGCTC GACCGCGCCC TGGAGTTCCT GCCCTCGGAC
GAGGAGCTGA ACGAGCGCGC CACCAACGGC CAGGGCCTGA CCCGCCCGGA GCTGTCGGTG
CTGATCTCCT ACAGCAAGAT CGACCTCAAG GAATCCTTGC TCAAGTCCCT GGTGCCGGAC
GACGACTACC TGGCGCGCGA GATGGAAACC GCCTTCCCGG AAATCCTCAC CGAGAAGTTC
GGCGACGCCA TGCGCCGTCA CCGCCTCAAG CGCGAGATCG TCAGCACGCA GATCGCCAAC
GACCTGGTCA ACCACATGGG CATCACCTTC GTGCAGCGCC TGAAGGAGTC CACCGGCATG
AGCGCGGCCA ACGTCGCCGG CGCCTACGTC ATCGTGCGTG ACCTGTTCCG CCTGCCGCAC
TGGTGGGCGC AGATCGAGGC GCTGGACTAC AAGGTGCCGG CCGAGCTGCA GCTGCAGCTG
ATGGACGAGC TGATGCGTCT GGGCCGCCGT GCCACCCGCT GGTTCCTGCG CAGCCGTCGC
AACGAGCTGG ACGCCGCCCG CGACGTGGCG CACTTCGCGC CGCGCATCGA GGCGCTGGTC
GGTCGTCTGG ACGAGCTGCT CGAAGGCCCG GCCCGCGAAC AGTGGCTGGC GCGTTACCAG
AGCTTCGTCG AAGCCGGCAC GCCGGAAGAG CTGGCGCGTG TGGTGGCCGG CACCAGCCAC
CTTTACACCC TGCTGCCGAT CATCGAAGCG GCGGATGTCA CCGGCAAGGA TGCCAGCGAG
GTGGCCACCG CCTACTTCGC CGTCGGCGGT GCGCTGGAGC TGTCCTGGTA CCTGCAGCAG
ATCACCAACC TGCCGGTGGA GACCAACTGG CAGGCGCTGG CCCGCGAAGC CTTCCGTGAT
GATCTGGACT GGCAGCAGCG CGCCATCACC GTCTCGGTAT TGCAGATGGC CGAGGGTCCG
CAGGAGATCG AGGCGCGCGT GGCGCTGTGG CTGGAGCAGC ACCACCGCCT GGTGGAGCGC
TGGAAGGCGA TGCTGACCGA GCTGCGCTCG GCCACCGGCA CCGACTACGC CATGTACGCC
GTGGCCAACC GCGAGCTGAT GGATCTGGCG CAGAGCGCCT GA
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| Protein sequence | MAFFTAASKA DFQHQLQAAL AQHVSEQALP QMALFAEQFF GIIALEELTQ RRLSDLVGCT
LSAWRMLERF DHGSPQVRAF NPDYEKHGWQ STHTAVEILH GDIPFLVDSV RMELNRRGYS
IHTLQNSVFS VRRDANGELL EILPRGTQGE GVLQEALMFL EIDRCSSSAE LKTLEKAIHE
VFGDVRMSVA DFQPMKAKAR ELLAWLDRAK LKVDKAELEE IKVYLNWLLD NHFTFLGYEE
FTVAPSADGG TMVYDEKSLL GLSKRLRTGL TAEELHIEPE AVAYLREPQL LSFAKAAVPS
RVHRPAYPDF VSIRELDAKG NVVKECRFMG LYTSAVYAES VWNIPYIRRK VDVIKQRSGF
DSSAHLGKEL AQVLEVLPRD DLFQTPVDDL FNTALAIVQI QERNKIRVFL RRDPYGRFCY
CLAYVPRDVY STETRLKIQQ VLMDRLQATD CEFWTFFSES VLARVQFILR VDPKNKTQID
PVRLEKEVIQ ACRSWKDDYA SLMVESFGEA QGTNVLAEFP GGFPAGYRER FAPHSAVVDM
QHLLSLSNDK PLVMSFYQPL AQGDQQLHCK LYHADTPLPL SDVLPILENL GLRVLGEFPY
KLRRNDGREF WIHDFAFTYA EGLDVDIQQL NDTLQDAFIH IVGGDAENDA FNRLVLIAAM
PWRDVALLRA YARYLKQIRL GFDLSYIAST LINHADIAKE LVRLFRTRFY LARKLTAEDL
EDKQQKLEQA ILAALDNVAV LNEDRILRRY LDLIKATLRT NFFQADASGA AKSYFSFKLS
PRLIPEIPRP VPKFEIFVYS PRVEGVHLRF GDVARGGLRW SDREEDFRTE VLGLVKAQQV
KNAVIVPMGA KGGFVPRKMP VGGSRDEVMA EGIACYRIFI SGLLDITDNL KEGEVVPPVN
VVRHDADDPY LVVAADKGTA TFSDIANGIA AEYGFWLGDA FASGGSAGYD HKGMGITAKG
GWVSVQRHFR ERGIDVQKDN VTVIGIGDMA GDVFGNGMLL SDKLQLVAAF NHMHIFIDPN
PDAAKSFAER KRLFDLPRSS WADYDSKLIS EGGGIFLRSA KSITITPQMK ARFDIAADKL
APTELLNALL KAPVDLLWNG GIGTYVKSSK ESHADVGDKA NDALRVDGRE LRAKVVGEGG
NLGMTQLGRV EFGLHGGASN TDFIDNAGGV DCSDHEVNIK ILLGEIVSGG DMTEKQRNKL
LAEMTDDVSE LVLGNNYKQT QALSLAERRA RERVGEYKRL MNALESAGKL DRALEFLPSD
EELNERATNG QGLTRPELSV LISYSKIDLK ESLLKSLVPD DDYLAREMET AFPEILTEKF
GDAMRRHRLK REIVSTQIAN DLVNHMGITF VQRLKESTGM SAANVAGAYV IVRDLFRLPH
WWAQIEALDY KVPAELQLQL MDELMRLGRR ATRWFLRSRR NELDAARDVA HFAPRIEALV
GRLDELLEGP AREQWLARYQ SFVEAGTPEE LARVVAGTSH LYTLLPIIEA ADVTGKDASE
VATAYFAVGG ALELSWYLQQ ITNLPVETNW QALAREAFRD DLDWQQRAIT VSVLQMAEGP
QEIEARVALW LEQHHRLVER WKAMLTELRS ATGTDYAMYA VANRELMDLA QSA
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