| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2925 |
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| Symbol | |
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| ID | 5107643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3234354 |
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| End bp | 3235841 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640504180 |
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| Product | general secretory pathway protein E |
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| Protein accession | YP_001188412 |
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| Protein GI | 146307947 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.366791 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.218914 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCTT CGCTGCTCGA AACTCCCCTG CGCCGCCTGC CCTTCAGCTT TGCCAAGCGT
CACGGCGTGG TGTTCATGCT CCACGAGGGG CAGGCCTGCC TGGGCCATCG GGCCGATTGC
GACCCCGTGG CGCTGGCCGA GGCGCAGCGC TTTGCCGGAC GTGCCCTGCC GCTGCAGCTG
TTGGCTCCCA GCGAGTTCGC CCAGGTGCTG GGCACGGCCT ATCAGCACGA TTCGGCGTCC
ATGCAGCTGG CCGAGGACAT CGGCGGCAGC TTCGATCTGG CCTCGCTGGC CGACCAGGTG
CCGGAAACCG AAGACCTGCT GGAGCAGGAG GACGACGCGC CGATCATCCG TCTGATCAAC
GCCATCCTCG GCGAAGCGAT CAAGGAGAAC GCCTCCGACA TCCACCTGGA GACCTTCGAG
AAACGCCTGG TGGTACGTTT TCGCGTCGAC GGCATTCTCC GCGAGGTGCT CGAGCCCAAG
CGCGAGCTGG CGGCGCTGCT GGTCTCGCGG GTCAAGGTGA TGGCTCGGCT GGACATCGCC
GAGAAGCGCG TGCCGCAGGA CGGACGCATC TCGCTCAAGG TGGGCGGGCG CGAGGTGGAC
ATCCGCGTCT CCACGCTGCC TTCGGCCAAC GGCGAGCGGG TGGTGCTGCG TCTGCTCGAC
AAGCAGGCCG GGCGCCTGTC GCTGCAGCAC CTGGGCATGC GCGCCGAGGA CCGCGCGCTG
ATGGAGGAGA CGGTGCGCAA ACCGCACGGC ATCCTGCTGG TCACCGGCCC CACCGGCTCG
GGCAAGACCA CCACCCTCTA CGCCAGTCTG GTCAGCCTCA ACGACCACAC GCGCAACATC
CTCACGGTCG AGGATCCCAT CGAATATCAC CTCGAAGGCA TCGGCCAGAC CCAGGTCAAC
GCCAAGGTGG ACATGACCTT CGCCCGTGGC CTGCGCGCCA TCCTGCGTCA GGACCCGGAC
GTGGTGATGG TCGGCGAGAT CCGCGACAAG GAAACTGCCG AGATCGCCGT GCAGGCCTCG
CTCACCGGTC ACCTGGTGCT TTCGACCTTG CACACCAACA GCGCCATCGG CGCCATTACC
CGTCTGGTGG ACATGGGCGT GGAGCCCTTC CTGCTGTCCT CGTCGCTGCT CGGTGTGCTG
GCCCAGCGCC TGGTACGGGT ACTGTGCCCG GCGTGCAAGG AACCATATCC GGCCGATGCG
GCCGAATGTA CGCTGCTGGG CGTGCCGGCC AGCCCGCCGC CGACGCTCTA CCATGCGCGC
GGCTGTGCCC AGTGCCACCA GCAGGGCTAT CGCGGGCGTA CCGGCATCTA CGAGCTGGTG
GTGTTCGACG AGACCATGCG CACCCTGGTG CACAGCCGTG CCTCGGAGCA GGACATGACC
CGCCACGCGC GCACGCTCGG CCCGAGCATT CGCGACGATG GCCGGCGCAA GGTGCTCGAA
GGGGTGACCA CGGTGGAAGA AGTGCTGCGG GTGACGCGCG AGGAATGA
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| Protein sequence | MNASLLETPL RRLPFSFAKR HGVVFMLHEG QACLGHRADC DPVALAEAQR FAGRALPLQL
LAPSEFAQVL GTAYQHDSAS MQLAEDIGGS FDLASLADQV PETEDLLEQE DDAPIIRLIN
AILGEAIKEN ASDIHLETFE KRLVVRFRVD GILREVLEPK RELAALLVSR VKVMARLDIA
EKRVPQDGRI SLKVGGREVD IRVSTLPSAN GERVVLRLLD KQAGRLSLQH LGMRAEDRAL
MEETVRKPHG ILLVTGPTGS GKTTTLYASL VSLNDHTRNI LTVEDPIEYH LEGIGQTQVN
AKVDMTFARG LRAILRQDPD VVMVGEIRDK ETAEIAVQAS LTGHLVLSTL HTNSAIGAIT
RLVDMGVEPF LLSSSLLGVL AQRLVRVLCP ACKEPYPADA AECTLLGVPA SPPPTLYHAR
GCAQCHQQGY RGRTGIYELV VFDETMRTLV HSRASEQDMT RHARTLGPSI RDDGRRKVLE
GVTTVEEVLR VTREE
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