| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2905 |
|---|
| Symbol | |
|---|
| ID | 5107623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3215641 |
|---|
| End bp | 3216654 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640504160 |
|---|
| Product | succinylglutamate desuccinylase |
|---|
| Protein accession | YP_001188392 |
|---|
| Protein GI | 146307927 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2988] Succinylglutamate desuccinylase |
|---|
| TIGRFAM ID | [TIGR03242] succinylglutamate desuccinylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.241493 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.781932 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGCTC TCGGCAAACT GCTTGAACTG ACCCTGGCCG GCCACGAGCC GTCGGCGAAG
ATCCAGCTGA CCCCCGATGG CACGCGCTTG CGCTGGCTGG ATGAGGGCGC GCTGGAGATT
ACCCCGCCGG CCGCGCGCGA CAACGGCCTC GACCTGCTGC TGTCGGCCGG CATCCACGGC
AACGAAACCG CGCCCATCGA GTTGCTCGAC CGCCTGTTGC GCGGTATCGC ACGCAACGAG
CTGCATCCGG CGGCGCGCAT TCTCTTCCTG TTCGGCAATC CCGAGGCCAT GCGCCGCGGC
GAGCGCTTCG TCGAGCAGGA CATCAACCGC CTGTTCAACG GTCGCCACGA GCAATCCAGC
GGTTTCGAGG CCATCCGTGC CTGCGACCTG GAACACCTGG CGGCTACCTT CTTCGGCAAG
GACACCGGTC GCACCCGTCT GCATTACGAC CTGCACACCG CCATCCGCGG CTCGAAGATC
GAGCAGTTCG CCCTCTATCC CTGGCACGAA GGGCGTACCC ACTCGCGCCG CGAACTGCAG
CGTCTGCGCG CCGCCGGGAT CGAAGCCGTG CTGCTGCAGA ACAAGGGTTC GATCACCTTC
AGTTCCTACA CCTACGGACA GCTCGGCGCC GAGGCTTTCA CCCTCGAACT GGGCAAGGCG
CGTGCGTTCG GCCAGAACCA GCTGGTCAAT CTCGACCTGC TGGAAAATGC CCTGCAGGCG
CTGATCGAAG GACGCGAGGT GATCGACGAC GAGCCGACGC TCGACGGCCT GCAGCTGTTC
GCCGTATCGC GCGAGATCAT CAAGCACAGC GACAGCTTCC AGCTGCATCT GCCGGCCGAT
ATCGAGAACT TCACCGAGCT CGAACCCGGC TACCTGCTCG CCGAGGACAT CGCCGACACC
CGCTGGGTGG TGGAGGAGCA GAATGCGCGC ATCATCTTCC CCAATCCCAA GGTCAAGAAC
GGTCTGCGTG CGGGCATCCT GATCGTGCCG GACGACGGTG CAGGCTTGGC GTAG
|
|---|
| Protein sequence | MLALGKLLEL TLAGHEPSAK IQLTPDGTRL RWLDEGALEI TPPAARDNGL DLLLSAGIHG
NETAPIELLD RLLRGIARNE LHPAARILFL FGNPEAMRRG ERFVEQDINR LFNGRHEQSS
GFEAIRACDL EHLAATFFGK DTGRTRLHYD LHTAIRGSKI EQFALYPWHE GRTHSRRELQ
RLRAAGIEAV LLQNKGSITF SSYTYGQLGA EAFTLELGKA RAFGQNQLVN LDLLENALQA
LIEGREVIDD EPTLDGLQLF AVSREIIKHS DSFQLHLPAD IENFTELEPG YLLAEDIADT
RWVVEEQNAR IIFPNPKVKN GLRAGILIVP DDGAGLA
|
|---|
| |