| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2835 |
|---|
| Symbol | |
|---|
| ID | 5107750 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3111798 |
|---|
| End bp | 3113276 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640504085 |
|---|
| Product | flagellin domain-containing protein |
|---|
| Protein accession | YP_001188322 |
|---|
| Protein GI | 146307857 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG1344] Flagellin and related hook-associated proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.00759619 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCTTA CAGTCAACAC TAACGTTGCG TCCCTCAACA CCCAACGTAA CCTGAACACT
TCCTCGAAGG GTCTGGATAC TTCTCTCCAG CGCCTGTCCA CCGGTTTCCG TATCAACAGC
GCGAAAGATG ACGCTGCTGG TCTGCAAATC TCTAACCGCC TGACCAGCCA GATCAGTGGC
TTGGGCGTTG CTACCCGTAA CGCCAACGAC GGTATCTCCC TGGCGCAGAC CGCTGAAGGT
GCCCTGCAGC AGTCCACCGG CATTCTGCAA CGTATGCGTG ACCTGGCCCT GCAAGCGGCC
AACGGCTCCA ACGGTGCAAC CGAACGTGCC GCTCTGCAAG GTGAAGTGGC CCAGCTGCAA
CAAGAGCTGA ACCGTATCTC CGATACCACC AGCTTTGGTG GCCGCAAGAT CCTCGACGGC
AGCTTCGGTT CGCAAAGCTT CCAGGTCGGC GCAAACGCTT ATGAGACCAT CAGCGTCTCC
ATCGGCTCTG CAGCTACCGA TCGTATCGGT ATCAACCGCT TCACCACTTC GGGTGCGGCA
GGTTCTGCCA TCGCCAGTGG TGCCACATTC AGCGCTACTT CCGGCAGTGC TTACACCTCT
ACGGGTTTCA GCATCACTTC CAAGCTGTCC AATGGCGCAG AAACAATTGC ACTGACCGCC
AGCGGCTCGG CCAGTGAAGT GGCCAGGGCC ATCAATTCCA AGAGCGATAC CACTGGCGTT
ACCGCCAATG CCCGTACCGT TGCAACTCTG GGTGGCTTCA CCACCAGCGG CACCATCTCG
TTCTCGCTCT ACGGTGCAAA CAGCAAGACT GTTGAAAGCG ACAAGTCCAC TGTCTCCGCA
GTCGTCACCG ATGTGACTGA CCTGCGCGCT CTGGCCGATG CGATCAACAA GGAAACGGGC
AAGACAGGTA TCTCTGCCGT TTCCAAGGGA TCGACCATCG AGTTGGTCAA TGATCGCGGC
GACGCCATCA TGATCCGCGA GTCCTCTCAG GCGGCGACAT TGACCGCTCG TGACTTCAAG
GGCGAGAACG ATGTCGGCGG TGCTGCAACA ATCGCAGCGG GTGGTGGTGC CCGAGTCGAT
GGCCAGGTGC AGCTCGAAGC GGCTGATGCC TTCCAGGTCA CGGGGCTGAG TGGAGGTCTT
GGTGCTGATG GTTTCAGTGC GCTGAACTCG GTCAAAGAGA TCGATATCAG CACCGCTACC
GGCGCTCAAG ACGCTCTGGG TATCATCAAC GGTGCGATCT CCAACATCGA CAGCCAGCGT
GCCCAGCTCG GTGCCGTGCA GAACCGCTTC GAGAACACCA TCTCGAACCT GCAGAACATC
GCTGAGAACT CCTCGGCTGC TCGTAGCCGG ATTCGTGACA CCGACTTCGC TGCGGAAACC
TCGGAACTGA CCAAGAATCA GATCCTGCAG CAGGCCGGTA CCGCGATCCT GGCCCAGGCC
AACCAGTTGC CGCAGGCAGT GCTCAGTCTG CTGGGCTAA
|
|---|
| Protein sequence | MALTVNTNVA SLNTQRNLNT SSKGLDTSLQ RLSTGFRINS AKDDAAGLQI SNRLTSQISG
LGVATRNAND GISLAQTAEG ALQQSTGILQ RMRDLALQAA NGSNGATERA ALQGEVAQLQ
QELNRISDTT SFGGRKILDG SFGSQSFQVG ANAYETISVS IGSAATDRIG INRFTTSGAA
GSAIASGATF SATSGSAYTS TGFSITSKLS NGAETIALTA SGSASEVARA INSKSDTTGV
TANARTVATL GGFTTSGTIS FSLYGANSKT VESDKSTVSA VVTDVTDLRA LADAINKETG
KTGISAVSKG STIELVNDRG DAIMIRESSQ AATLTARDFK GENDVGGAAT IAAGGGARVD
GQVQLEAADA FQVTGLSGGL GADGFSALNS VKEIDISTAT GAQDALGIIN GAISNIDSQR
AQLGAVQNRF ENTISNLQNI AENSSAARSR IRDTDFAAET SELTKNQILQ QAGTAILAQA
NQLPQAVLSL LG
|
|---|
| |