Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2827 |
Symbol | |
ID | 5107742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3104096 |
End bp | 3105508 |
Gene Length | 1413 bp |
Protein Length | 470 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640504077 |
Product | two component, sigma54 specific, Fis family transcriptional regulator |
Protein accession | YP_001188314 |
Protein GI | 146307849 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.0126149 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGCCA AAGTCCTGCT GGTTGAAGAC GATCGCGCCC TGCGCGAAGC CTTGGCCGAT ACCCTGTGCC TGGGCGGGCA TGATTATCGT GCGGTCGATT GTGCCGAGGC GGCCTTGGTC GCCCTGACCG AGGAGCCCTT CGGCCTGGTG GTCAGTGACG TCAACATGCC GGGCATGGAT GGGCATCAGT TGCTGGCGCA GATCCGCGCT CGCTATCCGC AGCTGCCGGT ACTGCTGATG ACGGCCTTCG GCGCCGTGGA GCGGGCGGTG GATGCGATTC GCCAGGGGGC TGCCGATTAT CTGGTCAAGC CGTTCGAGCC GCGCACCTTG CTGGAACTGG TGGCCAGGCA TGCGCTCGGC AAGCTGCCGG CGGGGGATCG CGACGGCCCG GTGGCGCTCG AGCCGGCCAG CGTGCAACTG CTGGAGCTGG CGGCCCGGGT AGCGCAGAGC GATTCGACGG TGATGATCAC CGGTGAGTCC GGTACCGGCA AAGAGGTGCT GGCGCGCTAC ATCCACCAGC AATCCCCGCG TTCGTCCAGA CCGTTCATCG CTATCAACTG CGCGGCGATT CCCGACAACA TGCTCGAGGC CACGCTGTTC GGCCATGAAA AGGGGGCGTT CACCGGTGCG GTCACGTCCC AGCCGGGCAA GTTCGAACTG GCCGATGGCG GCACCATCCT GCTCGACGAA ATTTCCGAGA TGCCCCTAGG TCTGCAGGCC AAGCTGCTGC GCGTGTTGCA GGAGCGCGAG GTGGAGCGGG TCGGAGCGCG CAAGCCGATC ACCCTGGACA TCCGCGTGCT GGCCACCAGC AACCGCGACC TGGCCAGTGA AGTGGCCGCT GGGCGTTTCC GTGAAGACCT CTACTATCGG CTTTCGGTCT TCCCGCTGGC CTGGCGGCCG CTGCGCGAGC GTCCTGCCGA CATTCTGCCG CTGGCTGAGC GGCTGCTGGC CAAGCACGTC AAAAAAATGA ATCAGGCGCC GGTGCGGCTG TCCGAGTCGG CTGCACAAAG CCTGGTGCAG CACCCCTGGC CAGGCAACGT GCGCGAGCTG GACAACGCCA TCCAGCGTGC GTTGATTCTC CAGCAGGGTG GAGTGATTCA GGCGCAGGAT CTCTGCCTGC ACGCACCCAT CGGCCAAAGC GTACAGGGCA CCGCGCCTCG CCTGGCGGTC GTACCCAGTG CGCCCGTTGC GCCGCCGGTG GCGGAGGAGG CGATGGTGGC CGATGGCGGC GCTCTGGGTG AGGACCTGCG GCGTCGTGAG TTCCAGGTGA TCATCGATAC CCTGCGGGCC GAGCGCGGCC GCCGCAAGGA GGCTGCCGAG CGTCTGGGCA TCAGCCCGCG CACCTTGCGC TACAAGCTGG CGCAGATGCG CGACGCCGGC ATGGATGTCG AGGCCTATCT CTACGCCAGC TAG
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Protein sequence | MAAKVLLVED DRALREALAD TLCLGGHDYR AVDCAEAALV ALTEEPFGLV VSDVNMPGMD GHQLLAQIRA RYPQLPVLLM TAFGAVERAV DAIRQGAADY LVKPFEPRTL LELVARHALG KLPAGDRDGP VALEPASVQL LELAARVAQS DSTVMITGES GTGKEVLARY IHQQSPRSSR PFIAINCAAI PDNMLEATLF GHEKGAFTGA VTSQPGKFEL ADGGTILLDE ISEMPLGLQA KLLRVLQERE VERVGARKPI TLDIRVLATS NRDLASEVAA GRFREDLYYR LSVFPLAWRP LRERPADILP LAERLLAKHV KKMNQAPVRL SESAAQSLVQ HPWPGNVREL DNAIQRALIL QQGGVIQAQD LCLHAPIGQS VQGTAPRLAV VPSAPVAPPV AEEAMVADGG ALGEDLRRRE FQVIIDTLRA ERGRRKEAAE RLGISPRTLR YKLAQMRDAG MDVEAYLYAS
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