Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2699 |
Symbol | |
ID | 5107850 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2960635 |
End bp | 2961207 |
Gene Length | 573 bp |
Protein Length | 190 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640503943 |
Product | RNA polymerase sigma factor |
Protein accession | YP_001188186 |
Protein GI | 146307721 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.0775043 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.196873 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACGCAC CTCTCACGGA TGACGACGCC GCCTTGCTGC GGCGTTACCG CCGCGGCGAC GCGGCGGCCT TCAATGCGCT GTACCAGCGC CACAGGCTGG GCCTGTTCCG CTTCCTGCTC GGCCTGTGCG GCGATCACGC CCTGGCCGAG GAAGTGTTCC AGGAAACCTG GATGAGCCTG GTGCGCAGCC AGAGCGAACA GCGCGAGGCG GTGCTGTTCA AGACCTGGCT GTACCAGATC GCGCGCAACC GCCTGATCGA CCATTGGCGC AAGACGGGCC GGCATCAGGC CGGGCACGAC GAATACGACG AGAGCCAGCA TGCCCTGGCT GACCCGCAGC CCGGCCCGGA GCAGCAGTGG GGCCTGAGTC GCGACAGCGA ACGGCTGCAG GCGGCGCTGG CCGACCTGCC GGAAGATCAG CGCGAGGTCT TTCTGTTGCG CGCCCATGGC GACCTGGAAC TGAACGAGAT TGCCGAGTTG ACCCGCACGC CGGCCGAGAC GGTCAAGAGC CGTCTGCGCT ACGCCCTGCA GAAACTGCGC CGGCTGCTGG CCACCGAGGA GTTGTCCGCA TGA
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Protein sequence | MNAPLTDDDA ALLRRYRRGD AAAFNALYQR HRLGLFRFLL GLCGDHALAE EVFQETWMSL VRSQSEQREA VLFKTWLYQI ARNRLIDHWR KTGRHQAGHD EYDESQHALA DPQPGPEQQW GLSRDSERLQ AALADLPEDQ REVFLLRAHG DLELNEIAEL TRTPAETVKS RLRYALQKLR RLLATEELSA
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