Gene Pmen_2699 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2699 
Symbol 
ID5107850 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2960635 
End bp2961207 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content68% 
IMG OID640503943 
ProductRNA polymerase sigma factor 
Protein accessionYP_001188186 
Protein GI146307721 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.0775043 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.196873 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACGCAC CTCTCACGGA TGACGACGCC GCCTTGCTGC GGCGTTACCG CCGCGGCGAC 
GCGGCGGCCT TCAATGCGCT GTACCAGCGC CACAGGCTGG GCCTGTTCCG CTTCCTGCTC
GGCCTGTGCG GCGATCACGC CCTGGCCGAG GAAGTGTTCC AGGAAACCTG GATGAGCCTG
GTGCGCAGCC AGAGCGAACA GCGCGAGGCG GTGCTGTTCA AGACCTGGCT GTACCAGATC
GCGCGCAACC GCCTGATCGA CCATTGGCGC AAGACGGGCC GGCATCAGGC CGGGCACGAC
GAATACGACG AGAGCCAGCA TGCCCTGGCT GACCCGCAGC CCGGCCCGGA GCAGCAGTGG
GGCCTGAGTC GCGACAGCGA ACGGCTGCAG GCGGCGCTGG CCGACCTGCC GGAAGATCAG
CGCGAGGTCT TTCTGTTGCG CGCCCATGGC GACCTGGAAC TGAACGAGAT TGCCGAGTTG
ACCCGCACGC CGGCCGAGAC GGTCAAGAGC CGTCTGCGCT ACGCCCTGCA GAAACTGCGC
CGGCTGCTGG CCACCGAGGA GTTGTCCGCA TGA
 
Protein sequence
MNAPLTDDDA ALLRRYRRGD AAAFNALYQR HRLGLFRFLL GLCGDHALAE EVFQETWMSL 
VRSQSEQREA VLFKTWLYQI ARNRLIDHWR KTGRHQAGHD EYDESQHALA DPQPGPEQQW
GLSRDSERLQ AALADLPEDQ REVFLLRAHG DLELNEIAEL TRTPAETVKS RLRYALQKLR
RLLATEELSA