| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2653 |
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| Symbol | |
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| ID | 5107962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2909825 |
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| End bp | 2912137 |
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| Gene Length | 2313 bp |
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| Protein Length | 770 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640503897 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001188140 |
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| Protein GI | 146307675 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.953805 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGCC TGCCCCGCCT GGCGGGCTCC TCCAAGCGGT TGTTGATGCT CTTGGTGCTG
CTGCTGGTGG CGCTGTTTCT GACCGCGATG TGGGTGATGT CCACGCTCAA CCTGGACTAT
TCCCAGCGCG CCATGGCCGA GCTGCGCCGC AGCCAGATCG AGGACAACTT CTACGCCAAT
CTCGGCCGTA TCAACAGCCA CCACCGGCGC ATGGAGCTGC ACACCGAATC CCTCGCCCGT
CTCGGTGAGC TGCTGCAGCC CAGCGGCAAT ACCGCCGAGC TGGAGACGCA ACTGCGGCAG
AAGCTGCGCG ACTTCAGCGA TGCCTTCGGC GTCGGCCTGT GGTTCGAGCC CGGTCATTTC
CCGGCACTGG CCGATACCCC CGGAATCTAC GCGCACTGGG CGGCGGACCG GCGCATCGAA
GTGCTGCGTC AGAGCGGCGA TCCGCGGCGC CTGGACTGGT ATCGCAACCT GCTGCCCAGC
GATCAGCCGC GCAACCTGCC ACTGGCCGAG CCACTGCTGT GGAGCGCCGC CTATTACAAC
CCGTTGTCGG ACGCCGCGGT GATCACCCTG GCCACGCCCC TGTACGACCG TCGCCAGCGC
ATCATCGGCC TGGCCAGCAG CGACTGGCGC AGCGAGGACG TGGTGCGCCT GATCAGCGAC
ATCAAGCTCA CGCCCAATAC CTTTTCCTTC CTGCTCGATC GCGACAATCG CAAGCTGACC
AGCCTCAGCG AACGCGACGA CACCCCGGCG GCGCAGCGCA TCATGGACGC CATCCTCGCC
GAACAGCTGA CCCGGGCCGC CGCCACCACC GCCGCTCCCG GCACAGCGCG GGCTCAACTC
TACAGTCGCG AATTGCTGAT CGACGGCGAG CGCTATGCCC TGCTGTTCGC CATGACCCGC
GCCAACATGC TGTTCGGCCT CGGTGTACCG CAGAACGAGA TCGACGCCGT GCTGGCCCCG
ATGCGCCAGA GCAACCTGCG CATTCTCGTG CTCACCGGGT TGGTGGTGTC GCTGCTGGCG
GCGCTGCTGC TGCACCTGAT CGCCAACACC ATGCGCCAGC TGGAGGCCTC CTACACCGAT
CCGTTGACCC AGCTGCCGAA CCGCGCGCGC CTGCTGCTGG ACCTGCAGCG CACGCCACGG
CCGAGCCTGA TCCTGCTCAA CCTCGACGCC TTCAAGGAAA TCAACGGCTT CTATGGTCAC
GCCTGTGGCG ACCAGATGTT GCGCCACCTT GGCGCGCAGC TGCTGCAGCA CCTGCGTTTG
GAGGCCGACA GCGCACGCCT GTACCGCCTC ACCGCCGACG AGTTCGCCGT GCTGCTGCCC
CGGCTCAGCG ACGAAGCGCT GGAGGCGCGG ATGAACGAAC TGGGCACCTT CATCCAGCGC
CAGCGGCTGG ACTGGCAGGG CCAGGAGGTG GGCTTCAACG CCACCTTCGG CGCCGCCAGG
CTCAGTGCCG GCGAGGCCCG CCAGGGACGC GACAGCCTGC TGGCGTCGGC GACCATCGCG
CTGAAGCTGG CGCGCCTGCA GCAGCGCAAC CACCTGCTCT ATGACCCGGC ATTGAAGATT
CGCGAGGAGT ACGAGCAGAA CCTGCTATGG GCCAACAAGG TCAAGACGGC CTTGCAGGAA
GACCGGCTGC TGCCCCACTT CCAGCCGATT CTCGACAACC ACGGCGGCAG CATCGGCAAG
TTCGAGTGCC TGGTGCGCAT GCTCGATGAC GATGGCCAGG TGATCAACCC GGGGCGTTTT
CTCGGCGTGG CGAAGAAAAT CCGCCTGCAT CGGCAGATCA CCCGGGTGAT GCTGGAGAAA
TGCCTGGAAC GCTTTCGCGA CCTGCCCTAC GAGTTCTCCA TCAACCTTTC CTACGAAGAT
CTGATCGACC CGCAGCTCAG CCAGACCATC AAGGAACAGC TGCAGCACAG CGGCATGGGG
CCCCGGCTGA TCTTCGAGAT TCTCGAATCC GAAGGCATCG ACAACTACAG CCAGGTGCGC
ACCTTCATCG ACGAGGTCAA GGCGTTGGGC TGCCGCATCG CCATCGATGA CTTCGGCACC
GGCTACTCCA ACTTCGAGCA CCTGCTGCGA CTCAACGTCG ATCTGATCAA GATCGACGGC
AGCCTGATCC GCCAGCTCGA CAGCGACCCC AACGCCCTGG CGGTGACCCT GGGCATCGTG
CAGTTCGCCC GCAGCCTCGG CATGCAGACG GTGGCCGAGT TCGTGCACTC GGCAGCGGTG
CAGGAGAAGG TGCTGGCCCT GGGTATCGAC TACTCGCAGG GCCAGCATAT CGGCATGCCG
CAGGCGCAGT TGCAGACACA ACCGCCGCCC TGA
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| Protein sequence | MASLPRLAGS SKRLLMLLVL LLVALFLTAM WVMSTLNLDY SQRAMAELRR SQIEDNFYAN
LGRINSHHRR MELHTESLAR LGELLQPSGN TAELETQLRQ KLRDFSDAFG VGLWFEPGHF
PALADTPGIY AHWAADRRIE VLRQSGDPRR LDWYRNLLPS DQPRNLPLAE PLLWSAAYYN
PLSDAAVITL ATPLYDRRQR IIGLASSDWR SEDVVRLISD IKLTPNTFSF LLDRDNRKLT
SLSERDDTPA AQRIMDAILA EQLTRAAATT AAPGTARAQL YSRELLIDGE RYALLFAMTR
ANMLFGLGVP QNEIDAVLAP MRQSNLRILV LTGLVVSLLA ALLLHLIANT MRQLEASYTD
PLTQLPNRAR LLLDLQRTPR PSLILLNLDA FKEINGFYGH ACGDQMLRHL GAQLLQHLRL
EADSARLYRL TADEFAVLLP RLSDEALEAR MNELGTFIQR QRLDWQGQEV GFNATFGAAR
LSAGEARQGR DSLLASATIA LKLARLQQRN HLLYDPALKI REEYEQNLLW ANKVKTALQE
DRLLPHFQPI LDNHGGSIGK FECLVRMLDD DGQVINPGRF LGVAKKIRLH RQITRVMLEK
CLERFRDLPY EFSINLSYED LIDPQLSQTI KEQLQHSGMG PRLIFEILES EGIDNYSQVR
TFIDEVKALG CRIAIDDFGT GYSNFEHLLR LNVDLIKIDG SLIRQLDSDP NALAVTLGIV
QFARSLGMQT VAEFVHSAAV QEKVLALGID YSQGQHIGMP QAQLQTQPPP
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