| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2567 |
|---|
| Symbol | |
|---|
| ID | 5108034 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2828827 |
|---|
| End bp | 2829840 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640503811 |
|---|
| Product | TRAP dicarboxylate transporter, DctP subunit |
|---|
| Protein accession | YP_001188055 |
|---|
| Protein GI | 146307590 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0507413 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00000000175996 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTC CGCTGCTCGC CATCCTCACC GCTGCCATGC TGTGCAGCCC ACTCGCCGCC
GTCAGCGTTC ACGCCGACGA AGTCCGTTCG CGGATGATCC GCTTCGGCTA CGGCCTCAAC
GAGAACAGCA ACCAGGGCCG CGCGGCCAAG CTGTTCGCCG AGGAGGTGGC CAAGGCCTCT
GACGGCAAAC TCAAGGTACG CACCTTCGGC GCTGCCAGCC TGGGGTCGGA CGACCAGATG
CAGAGCGCGC TGATCGGCGG TGCCCAGGAA ATGATGGTCG GCTCCACTGC CACCCTGGTC
GGCATCACCA AGGAAATGGC GGTATGGGAT ACGCCGTTTC TGTTCAGCAG CGCCGAGCAG
GCCGACGCCG TGCTCGACGG CCCGGTCGGC CGCCAGGTGA TGGACAAGCT GGAGGAGAAG
GGCCTGGTCG GCCTGGTGTA CTGGGAGAAC GGTTTCCGCA ACCTGACCAA CAACACCCGG
CCGATCACCA GGCTGGAGGA CTTCTCCGGG GTCAAGCTGC GCGTGATGCC CAACCCGGTG
TTTCTCGACA CCTTCAAGCT GATGGGTGCC AATGCCGTGC CGCTGCCGTT CTCCGAGCTG
TTCACCGCGC TGGAGACCAA GGCCGTGGAT GGTCAGGAGA ACCCGTTCAA CACCATCCTT
TCCTCGAAGT TCTACGAGGT GCAGAAGTAC CTGACCGTGA CCAACCACGT GTACAGCCCG
TGGATCGTCA CTGTGTCCAA GCGCTGGTGG GACGGCCTGT CGCAGACCGA GCAGAACATT
CTCATGGAGG CCGCGAAGAA GGCGCGTGAC TTCGAGCGTC AGGACACCCG CGAGGAGGCC
GCCCGCGCGC TGGCCGAGCT GAAGGACAAG GGCATGCAGA TCAACGAGGT AGACCCCGCC
GAAGTGCAGC GCATGCGCGA GCAGGCCGCG CCGGCGATCC AGAAGGTGGT CGACACGGTC
GGCCAGCAGC TGTTCGATCA GGTACAGGCC GAGGCTGAGA AGGCCGCCCT TTAA
|
|---|
| Protein sequence | MKRPLLAILT AAMLCSPLAA VSVHADEVRS RMIRFGYGLN ENSNQGRAAK LFAEEVAKAS
DGKLKVRTFG AASLGSDDQM QSALIGGAQE MMVGSTATLV GITKEMAVWD TPFLFSSAEQ
ADAVLDGPVG RQVMDKLEEK GLVGLVYWEN GFRNLTNNTR PITRLEDFSG VKLRVMPNPV
FLDTFKLMGA NAVPLPFSEL FTALETKAVD GQENPFNTIL SSKFYEVQKY LTVTNHVYSP
WIVTVSKRWW DGLSQTEQNI LMEAAKKARD FERQDTREEA ARALAELKDK GMQINEVDPA
EVQRMREQAA PAIQKVVDTV GQQLFDQVQA EAEKAAL
|
|---|
| |