Gene Pmen_2493 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2493 
Symbol 
ID5107369 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2757089 
End bp2757535 
Gene Length447 bp 
Protein Length148 aa 
Translation table11 
GC content61% 
IMG OID640503737 
Productthioesterase superfamily protein 
Protein accessionYP_001187981 
Protein GI146307516 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism 
TIGRFAM ID[TIGR00369] uncharacterized domain 1 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.0486038 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.110001 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAAC TGAATCTGGA ACAACTGGTG GCGCGCGCGC ACCAGCAGAA CGACTACGAC 
CCGCTGATCA ACCTGATCCC CTACGCCAAG CTGCTGGGCA TCGAATGCCT GCGCCTGGGC
GATGACATGG TCTTTCGCCT GCCGGCCAAC CGCGACTGCA TCGGTAACCC GGTGCTGCCG
GCCCTGCACG GCGGGGTGAT CGCCGGTTTC ATGGAGCATG CGGCCATGCT TCATCTGCTG
ATGTTCATGG GCATTCCACA TTTGCCGAAA ATCATCGACT TCTCGATAGA TTACCTGCGC
GCCGGCCATT ATCGTGACAC CTACGCGCAA TGCCAGGTCT GGCGCCAGGG GCGACGCGTC
GCCAACGTAG CGATCACCGC CTGGCAGACC ACCCAGACCG AACCTATCGC CACCGCTCGC
GCCCACTTCA AGGTCGATGA GCCTTAA
 
Protein sequence
MSELNLEQLV ARAHQQNDYD PLINLIPYAK LLGIECLRLG DDMVFRLPAN RDCIGNPVLP 
ALHGGVIAGF MEHAAMLHLL MFMGIPHLPK IIDFSIDYLR AGHYRDTYAQ CQVWRQGRRV
ANVAITAWQT TQTEPIATAR AHFKVDEP