| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2470 |
|---|
| Symbol | |
|---|
| ID | 5107346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2734527 |
|---|
| End bp | 2735747 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640503714 |
|---|
| Product | 3-oxoacyl-(acyl carrier protein) synthase I |
|---|
| Protein accession | YP_001187958 |
|---|
| Protein GI | 146307493 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0304] 3-oxoacyl-(acyl-carrier-protein) synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCGTG TAGTGATCAC CGGTCTGGGC ATCGTTTCCT GCCTGGGCAC TGACAAAGAA
GCCGTAGCCG CCAGCCTGCG CGCCGGCAAG TCGGGCATCC GCTTCAACCC GTCCTATGCC
GAGATGGGCC TGCGCAGCCA GGTCTCCGGC TCGGTCGACC TGAACCTGGA AGAGCTGATC
GACCGCAAGG TCTACCGTTT CATGGGCGAC GCCGCCGCCT TCGCCTACCT GTCCATGGAA
CAGGCGATCA AGGATGCCGG CCTCAGCGAA GAGCAGGTTT CCAACCCGCG CACCGGCCTG
ATCGCCGGTA GCGGCGGCGC CTCCACCTTC AACCAGATGG AAGCCCTCGA CACCCTGCGC
GAGAAAGGCG TCAAGCGTGT CGGCCCGTAC CGCGTACCGC GAACCATGGG CAGCACCGTG
TCCGCCTGCC TGGCCACACC GTTCAAGATC AAGGGCGTGA ACTACTCGAT CTCCTCGGCC
TGTGCCACCA GTGCTCATTG CATCGGCCAC GCCATGGAGC AGATTCAGAT GGGCAAACAG
GACATGGTCT TCGCCGGTGG CGGTGAAGAA GAACACTGGA GCCAGAGCTT CCTGTTCGAT
GCCATGGGCG CCCTCTCCAC CCAGTACAAC GAAACGCCGG ACAAGGCCTC GCGCGCCTAC
GACGCTAAGC GTGACGGTTT CGTCATCGCC GGTGGCGGCG GCATGGTGGT GGTCGAGGAG
CTGGAGCACG CCCTGGCCCG CGGCGCCAAG ATCTACGCTG AAATCGTCGG CTACGGCGCC
ACCAGCGATG GCTACGACAT GGTCGCGCCG AGCGGCGAAG GTGCGGTGCG CTGCATGCAG
CAGGCCCTGG CCACCGTCGA CACGCCGATC GACTACCTCA ACACCCACGG CACCTCCACC
CCGGTCGGCG ACGTTGCCGA GAGCCGCGCG GTACGTGAAG TGTTCGGCGA CAAGATGCCG
GCCATCAGCT CGACCAAGAG CCTCTCCGGC CACAGCCTGG GCGCTGCCGG TGTGCAGGAA
GCGATCTACT GCATGCTGAT GATGGAAGGC GACTTCATCG CCGCCTCGGC CAACATCGAC
GAAGTCGACC CGGACGTCGC CGATCTGCCG ATCCAGCTCA AGACCGTGGA GAACGCCAAG
CTCGACACCG TGATGAGCAA CAGCTTCGGC TTCGGCGGCA CCAACGCCAC CCTGGTGCTC
AAGCGCTGGA CCGGCAAGTG A
|
|---|
| Protein sequence | MRRVVITGLG IVSCLGTDKE AVAASLRAGK SGIRFNPSYA EMGLRSQVSG SVDLNLEELI
DRKVYRFMGD AAAFAYLSME QAIKDAGLSE EQVSNPRTGL IAGSGGASTF NQMEALDTLR
EKGVKRVGPY RVPRTMGSTV SACLATPFKI KGVNYSISSA CATSAHCIGH AMEQIQMGKQ
DMVFAGGGEE EHWSQSFLFD AMGALSTQYN ETPDKASRAY DAKRDGFVIA GGGGMVVVEE
LEHALARGAK IYAEIVGYGA TSDGYDMVAP SGEGAVRCMQ QALATVDTPI DYLNTHGTST
PVGDVAESRA VREVFGDKMP AISSTKSLSG HSLGAAGVQE AIYCMLMMEG DFIAASANID
EVDPDVADLP IQLKTVENAK LDTVMSNSFG FGGTNATLVL KRWTGK
|
|---|
| |