Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2416 |
Symbol | |
ID | 5108256 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2665849 |
End bp | 2667195 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640503660 |
Product | NADH-quinone oxidoreductase, F subunit |
Protein accession | YP_001187904 |
Protein GI | 146307439 |
COG category | [C] Energy production and conversion |
COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit |
TIGRFAM ID | [TIGR01959] NADH-quinone oxidoreductase, F subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0718255 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.148536 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAACCA TGACCTCCAT CGCCCCGGCC AACCGCGTAC CGCGCCAGGA GGAAAGTCAC CCGCTGACCT GGCGCCTGCG CGACGACGCC CAGCCGGTAT GGCTCGAGGA ATACCAGGCC AAGAACGGCT ACGCCGCCGC GCGCAAGGCG CTGACCGCGA TGGCCCAGGC CGACATCGTG CAGACCGTCA AGGATTCCGG GCTCAAGGGC CGTGGCGGCG CAGGCTTCCC CACTGGCGTG AAGTGGGGCC TGATGCCCAC CGACGAATCG CTCGATATCC GCTATCTGCT GTGCAACGCC GATGAAATGG AGCCCAACAC CTGGAAGGAC CGTCTGCTGA TGGAACAGCT GCCGCACCTG CTGGTGGAAG GCATGCTGAT CTCGGCGCGG GCGCTCAAGG CCTACCGTGG CTACATCTTC CTGCGCGGCG AGTACGTCGA AGCGGCGCAC AACCTCAACC GCGCCATCGA GGAAGCCAAG GCCGCCGGCC TGCTCGGCAG GAACATCTTC GGCTCGGGCT TCGACTTCGA GCTGTTCGTG CATACGGGGG CGGGGCGCTA CATCTGCGGC GAAGAAACCG CGCTGATCAA CTCCCTGGAA GGCCGCCGCG CCAACCCGCG CGCCAAGCCA CCCTTCCCCG CCGCCGTCGG CGTATGGGGC AAGCCCACCT GCGTGAACAA CGTCGAGACC CTGTGCAACG TGCCGGCCAT CGTTCAGCAC GGGGTGGACT GGTACAAGTC GCTGGCACGC GAAGGCAGCG AAGACCACGG CACCAAGCTG ATGGGTTTCT CCGGCAAGGT AAAGAACCCC GGCCTGTGGG AGCTGCCGTT CGGCATCAGT GCGCGCGAGC TGTTCGAAGA GCATGCCGGC GGCATGCGCG ATGGCTACCG GCTCAAATGC TGGCAGCCCG GCGGCGCCGG CACCGGCTTT CTGCTGCCCG AGCACCTGGA TGCACTGATG TACGCCGGCG GCATCGCCAA GGTCGGCACG CGCATGGGCA CCGGCCTGGC GCTGGCGGTG GACGACTCGA TCAACATGGT CTCGCTGCTG CGCAACATGG AGGAGTTCTT CGCCCGCGAA TCCTGCGGCT GGTGCACCCC CTGCCGCGAC GGCCTGCCCT GGAGCGTGAA GATCCTCCGT GCCCTGGAGC GCGGCGAAGG CACTCGCGAG GACATCGCCA CCCTGCTCGG CCTGGTCAAC TTCCTCGGCC CCGGCAAGAC CTTCTGCGCT CACGCGCCAG GCGCCGTGGA GCCGTTGGGC AGTGCCATCA AGTATTTCCG TGAAGAGTTC GAGGCAGGCG TAGCCCAGGC GACGACCACG CCCCGCATGC CGGCGGCCGC GAGCTGA
|
Protein sequence | MKTMTSIAPA NRVPRQEESH PLTWRLRDDA QPVWLEEYQA KNGYAAARKA LTAMAQADIV QTVKDSGLKG RGGAGFPTGV KWGLMPTDES LDIRYLLCNA DEMEPNTWKD RLLMEQLPHL LVEGMLISAR ALKAYRGYIF LRGEYVEAAH NLNRAIEEAK AAGLLGRNIF GSGFDFELFV HTGAGRYICG EETALINSLE GRRANPRAKP PFPAAVGVWG KPTCVNNVET LCNVPAIVQH GVDWYKSLAR EGSEDHGTKL MGFSGKVKNP GLWELPFGIS ARELFEEHAG GMRDGYRLKC WQPGGAGTGF LLPEHLDALM YAGGIAKVGT RMGTGLALAV DDSINMVSLL RNMEEFFARE SCGWCTPCRD GLPWSVKILR ALERGEGTRE DIATLLGLVN FLGPGKTFCA HAPGAVEPLG SAIKYFREEF EAGVAQATTT PRMPAAAS
|
| |