Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2397 |
Symbol | |
ID | 5108237 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2644531 |
End bp | 2646759 |
Gene Length | 2229 bp |
Protein Length | 742 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640503641 |
Product | isocitrate dehydrogenase, NADP-dependent |
Protein accession | YP_001187885 |
Protein GI | 146307420 |
COG category | [C] Energy production and conversion |
COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.942581 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.0892636 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCACCC CTTCGAAGAT CATCTACACC TTCACCGACG AAGCTCCGGC CCTTGCTACC TATTCGCTTC TGCCCATTGT AGAAGCCTTT GCCGCATCGG CTGACATCTC CGTTGAAACC CGCGACATCT CTCTTGCTGG ACGGATCCTG GCAAGCTTTG CTGACCGCCT GGACGCCGAC AAGCGCATCG ATGACGACCT GGCCAAGCTG GCCGAGCTGA CCCTGCAGCC GGACGCCAAC ATCATCAAAC TGCCGAACAT CAGCGCCTCC GTCCCCCAGC TCAAGGCCGC CATCGCCGAG CTGCAGGCCC AGGGCTACAA CATCCCCGAT TTCCCGGAAG ATCCGCAGAG CGAAGAAGAC AAGGAAGTGC GCGCACGCTA CGCCAAGGTG CTGGGCAGCG CGGTGAACCC GGTGCTGCGC GAAGGCAACT CCGACCGCCG CGCACCGGCC GCGGTCAAGG CCTATGCGCG CAAGCACCCG CACAGTATGG GCAAGTGGAG CATGGCTTCG CAGTCCCACG CCGACTACAT GCGCGGCGGC GACTTTTTCT CCAGCGAGCA GTCGATCACC ATGGCCAAGG CCGGTGACGT GCGCATCGAG TTCGTCGGCA AGGACGGCAA GGTCGAGGTC AAGAAGCAAC TGGCCCTGCA GGAAGGCGAA GTGTTCGACA GCATGTTCAT GAGCTGCCGC AAGCTGCGTG ACTTCTTCGA GAAGACCCTG CAGGACTGCA AGGAAACCGG CGTGATGTGG TCCCTGCACG TCAAGGCGAC CATGATGAAG GTCTCCCACC CGATCGTCTT CGGCCACGCC GTCAGCGTTT ACTACAAGGA CGTGTTCGAC AAGTACGGCG AGCTGTTCAA GGAGCTGGGC GTCAACCCGA ACAACGGCAT CAGCAGTGTC TACGACAAAA TCAAGGCCCT GCCCGCTTCG CAGCAGGAAG AGATCCTGCA CGACATCCAC GAGGTCTACA GCCATCGCCC GGAAATGGCC ATGGTCGACT CGGTCAAGGG CATCACCAAC CTGCACATCC CGAGCGACGT GATCGTCGAC GCCTCGATGC CGGCGATGAT CCGCAACTCC GGCCAGATGT GGGGCAAGGA CGGCAAGCAG AAAGACACCA AGGCGGTCAT GCCTGAGAGC ACCTATGCGC GCATCTATCA GGAAATGATC AACTTCTGCA AAACCAACGG TGCGTTCGAC CCGACCACCA TGGGCAGCGT GCCGAACGTC GGCCTGATGG CGCAGAAGGC CGAGGAATAC GGCTCCCACG ACAAGACCTT CGAAATGACC GCTGACGGCA CCATGCGCGT CGTCGCTGCC GACGGCACCG TGCTGATGCA GCACCAGGTC GAAGCCGGCG ACATCTGGCG CGCCTGCCAG ACCAAGGACG CGCCGATCCG CGACTGGGTC AAGCTGGCCG TTACCCGCGC CCGTCAGTCC AACACCCCGG CGATCTTCTG GCTGGACCCG GAGCGCGCTC ACGATCGCGA GCTGCAGAAG AAGGTCGAGC TGTACCTCAA GGACCACGAC CTGACTGGCC TGGACATCCG CATGATGGGC TACAACGAAG CCATCCGCGT ATCCATGGAG CGCATGATTC GTGGCCTGGA CACCATCTCG GTGACCGGCA ACGTACTGCG TGACTACCTG ACCGACCTGT TCCCGATCAT GGAGCTGGGT ACCTCGGCCA AGATGCTGTC CATCGTTCCG CTGATGGCTG GCGGCGGCAT GTACGAGACC GGTGCCGGCG GCTCGGCACC CAAGCACGTG CAGCAGCTGG TCGAAGAGAA CTACCTGCGC TGGGATTCCC TGGGCGAGTT CCTGGCCCTG GCCGTGTCGC TGGAAGAAAC CGGCATCAAG ACCAACAACG CCAAGGCCAA GGTACTGGGC AAGACCCTGG ATCAGGCCAC CGGCAAGCTG CTGGACAACA ACAAGTCCCC GGCGCGCAAG GTGGGTGAGA TCGACAACCG CGGCAGCCAC TTCTACCTGG CGCTGTACTG GGCCCAGGCC CTGGCCGAGC AGAATGACGA TGCCGAGCTG AAGGCTCACT TCGCCCCGCT GGCCAAGCAG CTGACCGAGC AGGAAGCGAC CATCGTTGGC GAACTGGCTG CCGTACAGGG CAAGCCGGTC GACATCGGCG GCTACTACCG CTCCAACCCC GAGCTGACCA GCCAGGTGAT GCGCCCCAGC GCCACCTTCA ACGCAGCCCT GGCTGCGCTG AATGCCTGA
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Protein sequence | MSTPSKIIYT FTDEAPALAT YSLLPIVEAF AASADISVET RDISLAGRIL ASFADRLDAD KRIDDDLAKL AELTLQPDAN IIKLPNISAS VPQLKAAIAE LQAQGYNIPD FPEDPQSEED KEVRARYAKV LGSAVNPVLR EGNSDRRAPA AVKAYARKHP HSMGKWSMAS QSHADYMRGG DFFSSEQSIT MAKAGDVRIE FVGKDGKVEV KKQLALQEGE VFDSMFMSCR KLRDFFEKTL QDCKETGVMW SLHVKATMMK VSHPIVFGHA VSVYYKDVFD KYGELFKELG VNPNNGISSV YDKIKALPAS QQEEILHDIH EVYSHRPEMA MVDSVKGITN LHIPSDVIVD ASMPAMIRNS GQMWGKDGKQ KDTKAVMPES TYARIYQEMI NFCKTNGAFD PTTMGSVPNV GLMAQKAEEY GSHDKTFEMT ADGTMRVVAA DGTVLMQHQV EAGDIWRACQ TKDAPIRDWV KLAVTRARQS NTPAIFWLDP ERAHDRELQK KVELYLKDHD LTGLDIRMMG YNEAIRVSME RMIRGLDTIS VTGNVLRDYL TDLFPIMELG TSAKMLSIVP LMAGGGMYET GAGGSAPKHV QQLVEENYLR WDSLGEFLAL AVSLEETGIK TNNAKAKVLG KTLDQATGKL LDNNKSPARK VGEIDNRGSH FYLALYWAQA LAEQNDDAEL KAHFAPLAKQ LTEQEATIVG ELAAVQGKPV DIGGYYRSNP ELTSQVMRPS ATFNAALAAL NA
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